Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005845.1 Kokia drynarioides strain JFW-HI SEQ_120143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41631
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:155 original size:24 final size:24
Alignment explanation
Indices: 105--162 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
95 GTGGTGATGG
* * **
105 TGGTGGTGGTGGTTGTCGTGGTTA
1 TGGTGGTGGTGATAGTCGTGGACA
*
129 TGGTGGTGGTGATAGTTGTGGACA
1 TGGTGGTGGTGATAGTCGTGGACA
*
153 TGGTCGTGGT
1 TGGTGGTGGT
163 TTTAGTGGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.09, C:0.05, G:0.48, T:0.38
Consensus pattern (24 bp):
TGGTGGTGGTGATAGTCGTGGACA
Found at i:278 original size:6 final size:6
Alignment explanation
Indices: 260--667 Score: 183
Period size: 6 Copynumber: 67.5 Consensus size: 6
250 AAATTTACTG
* * * * *
260 CTGCTA CTACTA CTGCTA CAGCTA CAGCTA CAGCTA CTATTACTA CTGCTA
1 CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA C---TGCTA CTGCTA
* ** * *
311 CTACTA CTATTA TTGCTA CTACTA CTGCTA ---CTA CTGCTA CTGTTACTA
1 CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTG---CTA
* * * * *
359 CTGCTA CTACTA GTGTTA CTGCTA CTGTTA CTGCTA CTGCTA TTGCTA
1 CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA
* * * * * * *
407 TTGCTA CTGCTA TTGTTA CTGCTA CTGCTA CTACTT CAGCTA CTACTA
1 CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA
** * ** * * * * *
455 CAACTA CTACTA CTATTA CTGCTA CTGCTA TTACTG CTACTA TTGCTA
1 CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA
* * * * * * ** * * * *
503 CTACAA CTACTA CTACTG TTGCTA CAACTA TTACTA CTACTA CTACTA
1 CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA
* * * * * * *
551 CTGCTA CTACTA CTGCTG CTGCTA CTACTA CTACTA CTACTG CTACTA
1 CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA
* * * * ** * * * *
599 CTGCAA CTACTA CTACTA CTGCTA CTGTTA CTAATA CTGTTG TTACTA
1 CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA CTGCTA
*
647 CTACTA CTGCTA CTGCTA CTG
1 CTGCTA CTGCTA CTGCTA CTG
668 TTGCCACTAC
Statistics
Matches: 307, Mismatches: 86, Indels: 18
0.75 0.21 0.04
Matches are distributed among these distances:
3 3 0.01
6 294 0.96
9 10 0.03
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.36
Consensus pattern (6 bp):
CTGCTA
Found at i:305 original size:21 final size:21
Alignment explanation
Indices: 281--351 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 21
271 ACTGCTACAG
281 CTACAGCTAC-AGCTACTATTA
1 CTACAGCTACTA-CTACTATTA
*
302 CTACTGCTACTACTACTATTA
1 CTACAGCTACTACTACTATTA
* **
323 -T--TGCTACTACTACTGCTA
1 CTACAGCTACTACTACTATTA
*
341 CTACTGCTACT
1 CTACAGCTACT
352 GTTACTACTG
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
18 15 0.35
19 1 0.02
20 1 0.02
21 25 0.58
22 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (21 bp):
CTACAGCTACTACTACTATTA
Found at i:667 original size:12 final size:12
Alignment explanation
Indices: 255--666 Score: 238
Period size: 12 Copynumber: 35.1 Consensus size: 12
245 AAAATAAATT
*
255 TACTGCTGCTAC
1 TACTACTGCTAC
267 TACTACTGCTAC
1 TACTACTGCTAC
*
279 -AGCTACAGCTACAGC
1 TA-CTACTGCT--A-C
* *
294 TACTATTACTAC
1 TACTACTGCTAC
* *
306 TGCTACTACTAC
1 TACTACTGCTAC
* *
318 TATTATTGCTAC
1 TACTACTGCTAC
330 TACTACTGCTAC
1 TACTACTGCTAC
* * **
342 TACTGCTACTGT
1 TACTACTGCTAC
354 TACTACTGCTAC
1 TACTACTGCTAC
* *
366 TACTAGTGTTAC
1 TACTACTGCTAC
* *
378 TGCTACTGTTAC
1 TACTACTGCTAC
* *
390 TGCTACTGCTAT
1 TACTACTGCTAC
* *
402 TGCTATTGCTAC
1 TACTACTGCTAC
* * *
414 TGCTATTGTTAC
1 TACTACTGCTAC
*
426 TGCTACTGCTAC
1 TACTACTGCTAC
* *
438 TACTTCAGCTAC
1 TACTACTGCTAC
**
450 TACTACAACTAC
1 TACTACTGCTAC
**
462 TACTACTATTAC
1 TACTACTGCTAC
*
474 TGCTACTGCTA-
1 TACTACTGCTAC
485 T--TACTGCTAC
1 TACTACTGCTAC
495 TA-T--TGCTAC
1 TACTACTGCTAC
* *
504 TACAACTACTAC
1 TACTACTGCTAC
**
516 TACTGTTGCTAC
1 TACTACTGCTAC
*
528 AACTA-T--TAC
1 TACTACTGCTAC
537 TACTA---CTAC
1 TACTACTGCTAC
546 TACTACTGCTAC
1 TACTACTGCTAC
*
558 TACTACTGCTGC
1 TACTACTGCTAC
* *
570 TGCTACTACTAC
1 TACTACTGCTAC
* *
582 TACTACTACTGC
1 TACTACTGCTAC
*
594 TACTACTGCAAC
1 TACTACTGCTAC
*
606 TACTACTACTAC
1 TACTACTGCTAC
* *
618 TGCTACTGTTAC
1 TACTACTGCTAC
* * **
630 TAATACTGTTGT
1 TACTACTGCTAC
*
642 TACTACTACTAC
1 TACTACTGCTAC
*
654 TGCTACTGCTAC
1 TACTACTGCTAC
666 T
1 T
667 GTTGCCACTA
Statistics
Matches: 310, Mismatches: 76, Indels: 28
0.75 0.18 0.07
Matches are distributed among these distances:
9 31 0.10
10 1 0.00
11 4 0.01
12 265 0.85
13 1 0.00
14 1 0.00
15 6 0.02
16 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.10, T:0.36
Consensus pattern (12 bp):
TACTACTGCTAC
Found at i:1428 original size:84 final size:84
Alignment explanation
Indices: 1287--1456 Score: 340
Period size: 84 Copynumber: 2.0 Consensus size: 84
1277 GTGTCGGTAG
1287 ACTGTAATTGTACTTTCGTGTCAAAAATAGTTAAATCCAAGAGAAAATAGATGAGAAGAATTGGA
1 ACTGTAATTGTACTTTCGTGTCAAAAATAGTTAAATCCAAGAGAAAATAGATGAGAAGAATTGGA
1352 TAAGAAACAAAGTAATCTA
66 TAAGAAACAAAGTAATCTA
1371 ACTGTAATTGTACTTTCGTGTCAAAAATAGTTAAATCCAAGAGAAAATAGATGAGAAGAATTGGA
1 ACTGTAATTGTACTTTCGTGTCAAAAATAGTTAAATCCAAGAGAAAATAGATGAGAAGAATTGGA
1436 TAAGAAACAAAGTAATCTA
66 TAAGAAACAAAGTAATCTA
1455 AC
1 AC
1457 ATTGAAAGTT
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.46, C:0.10, G:0.18, T:0.26
Consensus pattern (84 bp):
ACTGTAATTGTACTTTCGTGTCAAAAATAGTTAAATCCAAGAGAAAATAGATGAGAAGAATTGGA
TAAGAAACAAAGTAATCTA
Found at i:3213 original size:22 final size:19
Alignment explanation
Indices: 3185--3228 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
3175 AATGCAGTGA
3185 TAAATAAAAATGCAATGACAAC
1 TAAAT-AAAATGC-ATG-CAAC
*
3207 TAAATAAGATGCATGCAAC
1 TAAATAAAATGCATGCAAC
3226 TAA
1 TAA
3229 TTACTGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 3 0.14
21 6 0.29
22 5 0.24
ACGTcount: A:0.55, C:0.14, G:0.11, T:0.20
Consensus pattern (19 bp):
TAAATAAAATGCATGCAAC
Found at i:12402 original size:21 final size:21
Alignment explanation
Indices: 12378--12623 Score: 83
Period size: 21 Copynumber: 11.9 Consensus size: 21
12368 TCGTTTCTAT
*
12378 TACTGTTACTACTGCTGCTAC
1 TACTATTACTACTGCTGCTAC
* *
12399 TACTATTGCTATTGCTGCTAC
1 TACTATTACTACTGCTGCTAC
* * * **
12420 TACTACTACAATTATTGCTAC
1 TACTATTACTACTGCTGCTAC
* *
12441 TGCTACTACTACT-CT--TAC
1 TACTATTACTACTGCTGCTAC
* * * *
12459 TACTAGTGCTACTGCTACTAT
1 TACTATTACTACTGCTGCTAC
** * * *
12480 TACTGCTACTATTGCTCCTAT
1 TACTATTACTACTGCTGCTAC
* *
12501 TGCTACTACTACTGCTAG-TAC
1 TACTATTACTACTGCT-GCTAC
* ** *
12522 TGCTGCTACTATTGCTGCTAC
1 TACTATTACTACTGCTGCTAC
* ** * *
12543 TAC---TACAACAACTACTAT
1 TACTATTACTACTGCTGCTAC
* *
12561 TACTATTGCTACTGCTACTAC
1 TACTATTACTACTGCTGCTAC
* *
12582 TACTGTTACTGCTACTTCTGCTAC
1 TACTATTA---CTACTGCTGCTAC
* *
12606 TACTACTGCTACTGCTGC
1 TACTATTACTACTGCTGC
12624 CACACTGACC
Statistics
Matches: 166, Mismatches: 48, Indels: 22
0.70 0.20 0.09
Matches are distributed among these distances:
18 25 0.15
19 2 0.01
20 2 0.01
21 121 0.73
24 16 0.10
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.38
Consensus pattern (21 bp):
TACTATTACTACTGCTGCTAC
Found at i:12420 original size:30 final size:30
Alignment explanation
Indices: 12378--12618 Score: 157
Period size: 30 Copynumber: 7.7 Consensus size: 30
12368 TCGTTTCTAT
* *
12378 TACTGTTACTACTGCTGCTACTACTATTGC
1 TACTGCTACTACTACTGCTACTACTATTGC
* * * * *
12408 TATTGCTGCTACTACTACTACAATTATTGC
1 TACTGCTACTACTACTGCTACTACTATTGC
*
12438 TACTGCTACTACTACT-CTTACTACTAGTGC
1 TACTGCTACTACTACTGC-TACTACTATTGC
*
12468 TACTGCTACTATTACTGCTACTATTGCTCCTATTGC
1 TACTGCTACTACTACTGCTACTA------CTATTGC
* * *
12504 TACTACTACTGCTAGTACTGCTGCTACTATTGC
1 TACTGCTA---CTACTACTGCTACTACTATTGC
* * * * *
12537 TGCTACTACTACAACAACTACTATTACTATTGC
1 TACTGCTACT---ACTACTGCTACTACTATTGC
* *
12570 TACTGCTACTACTACTGTTACTGCTA---C
1 TACTGCTACTACTACTGCTACTACTATTGC
*
12597 TTCTGCTACTACTACTGCTACT
1 TACTGCTACTACTACTGCTACT
12619 GCTGCCACAC
Statistics
Matches: 165, Mismatches: 32, Indels: 31
0.72 0.14 0.14
Matches are distributed among these distances:
27 21 0.13
29 1 0.01
30 79 0.48
31 1 0.01
33 37 0.22
36 13 0.08
39 13 0.08
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.38
Consensus pattern (30 bp):
TACTGCTACTACTACTGCTACTACTATTGC
Found at i:12452 original size:12 final size:12
Alignment explanation
Indices: 12378--12618 Score: 124
Period size: 12 Copynumber: 19.8 Consensus size: 12
12368 TCGTTTCTAT
*
12378 TACTGTTACTAC
1 TACTGCTACTAC
*
12390 TGCTGCTACTAC
1 TACTGCTACTAC
* * *
12402 TATTGCTATTGC
1 TACTGCTACTAC
* *
12414 TGCTACTACTAC
1 TACTGCTACTAC
*** * *
12426 TACAATTATTGC
1 TACTGCTACTAC
12438 TACTGCTACTAC
1 TACTGCTACTAC
12450 TACT-CTTACTAC
1 TACTGC-TACTAC
* *
12462 TAGTGCTACTGC
1 TACTGCTACTAC
** *
12474 TACTATTACTGC
1 TACTGCTACTAC
** * *
12486 TACTATTGCTCC
1 TACTGCTACTAC
*
12498 TATTGCTACTAC
1 TACTGCTACTAC
*
12510 TACTGCTAGTAC
1 TACTGCTACTAC
* *
12522 TGCTGCTACTAT
1 TACTGCTACTAC
*
12534 TGCTGCTACTAC
1 TACTGCTACTAC
** *
12546 TACAACAACTAC
1 TACTGCTACTAC
* * * *
12558 TATTACTATTGC
1 TACTGCTACTAC
12570 TACTGCTACTAC
1 TACTGCTACTAC
*
12582 TACTGTTACTGCTAC
1 TACTG---CTACTAC
*
12597 TTCTGCTACTAC
1 TACTGCTACTAC
12609 TACTGCTACT
1 TACTGCTACT
12619 GCTGCCACAC
Statistics
Matches: 168, Mismatches: 56, Indels: 10
0.72 0.24 0.04
Matches are distributed among these distances:
11 1 0.01
12 156 0.93
13 1 0.01
15 10 0.06
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.38
Consensus pattern (12 bp):
TACTGCTACTAC
Found at i:12619 original size:6 final size:6
Alignment explanation
Indices: 12435--12621 Score: 85
Period size: 6 Copynumber: 31.7 Consensus size: 6
12425 CTACAATTAT
* * * **
12435 TGCTAC TGCTAC TACTAC T-CTTAC TACTAG TGCTAC TGCTAC TATTAC
1 TGCTAC TGCTAC TGCTAC TGC-TAC TGCTAC TGCTAC TGCTAC TGCTAC
** * * * * * * *
12483 TGCTAC TATTGC TCCTAT TGCTAC TACTAC TGCTAG TACTGC TGCTAC
1 TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC
** * * ** * * * * *
12531 TATTGC TGCTAC TACTAC AACAAC TACTAT TACTAT TGCTAC TGCTAC
1 TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC
* * *
12579 TACTAC TGTTAC TGCTAC T--T-C TGCTAC TACTAC TGCTAC TGCT
1 TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC TGCTAC TGCT
12622 GCCACACTGA
Statistics
Matches: 131, Mismatches: 45, Indels: 10
0.70 0.24 0.05
Matches are distributed among these distances:
3 2 0.02
4 1 0.01
5 2 0.02
6 125 0.95
7 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.11, T:0.37
Consensus pattern (6 bp):
TGCTAC
Found at i:12623 original size:9 final size:9
Alignment explanation
Indices: 12567--12623 Score: 51
Period size: 9 Copynumber: 6.3 Consensus size: 9
12557 CTATTACTAT
12567 TGCTACTGC
1 TGCTACTGC
* *
12576 TACTACTAC
1 TGCTACTGC
*
12585 TGTTACTGC
1 TGCTACTGC
* *
12594 TACTTCTGC
1 TGCTACTGC
* *
12603 TACTACTAC
1 TGCTACTGC
12612 TGCTACTGC
1 TGCTACTGC
12621 TGC
1 TGC
12624 CACACTGACC
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.18, C:0.32, G:0.14, T:0.37
Consensus pattern (9 bp):
TGCTACTGC
Found at i:12696 original size:27 final size:24
Alignment explanation
Indices: 12675--12747 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 24
12665 CACCATCACC
*
12675 TCCACCACGATAACCACAACCACTA
1 TCCACCACAATAACCACAACCAC-A
12700 GTACCACCACAATAACCACAACCACA
1 -T-CCACCACAATAACCACAACCACA
* * *
12726 TCCACCACCATCACCACCACCA
1 TCCACCACAATAACCACAACCA
12748 TGACAAGCAC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.43
25 1 0.02
26 2 0.05
27 21 0.50
ACGTcount: A:0.40, C:0.48, G:0.03, T:0.10
Consensus pattern (24 bp):
TCCACCACAATAACCACAACCACA
Found at i:12742 original size:12 final size:12
Alignment explanation
Indices: 12702--12748 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
12692 AACCACTAGT
* *
12702 ACCACCACAATA
1 ACCACCACCATC
*
12714 ACCACAACCA-C
1 ACCACCACCATC
12725 ATCCACCACCATC
1 A-CCACCACCATC
12738 ACCACCACCAT
1 ACCACCACCAT
12749 GACAAGCACT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 1 0.03
12 26 0.90
13 2 0.07
ACGTcount: A:0.40, C:0.51, G:0.00, T:0.09
Consensus pattern (12 bp):
ACCACCACCATC
Found at i:16185 original size:19 final size:19
Alignment explanation
Indices: 16160--16203 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
16150 TTTAAGGTAC
16160 AAATAATAAACAAATAAAT
1 AAATAATAAACAAATAAAT
* * *
16179 CAATAATATACAAATGAAT
1 AAATAATAAACAAATAAAT
16198 AAATAA
1 AAATAA
16204 ATGTAAATTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.68, C:0.07, G:0.02, T:0.23
Consensus pattern (19 bp):
AAATAATAAACAAATAAAT
Found at i:19348 original size:9 final size:9
Alignment explanation
Indices: 19334--19379 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
19324 TAAGCAACCA
19334 TTTTTTTTC
1 TTTTTTTTC
19343 TTTTTTTTC
1 TTTTTTTTC
*
19352 --TCTTTT-
1 TTTTTTTTC
19358 TTTTTTTTC
1 TTTTTTTTC
*
19367 CTTTTTTTC
1 TTTTTTTTC
19376 TTTT
1 TTTT
19380 CGAACCTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
7 5 0.17
8 5 0.17
9 20 0.67
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:19363 original size:15 final size:14
Alignment explanation
Indices: 19338--19380 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 14
19328 CAACCATTTT
19338 TTTTCTTTTTTTTCTC
1 TTTT-TTTTTTTTC-C
19354 TTTTTTTTTTTTCC
1 TTTTTTTTTTTTCC
*
19368 TTTTTTTCTTTTC
1 TTTTTTTTTTTTC
19381 GAACCTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 13 0.50
15 9 0.35
16 4 0.15
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTTTTCC
Found at i:22464 original size:19 final size:19
Alignment explanation
Indices: 22384--22464 Score: 64
Period size: 18 Copynumber: 4.4 Consensus size: 19
22374 TAAAATACTA
22384 AAAATAAAA--AAATAAAT
1 AAAATAAAATTAAATAAAT
* *
22401 AGAAATAAAATAAAATAATT
1 A-AAATAAAATTAAATAAAT
*
22421 GAAAT-AAATT-AAT-AAT
1 AAAATAAAATTAAATAAAT
*
22437 GAATTATAAAATTAAATAAAT
1 -AA-AATAAAATTAAATAAAT
22458 AAAATAA
1 AAAATAA
22465 TGGATTGCCT
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
16 2 0.04
17 5 0.10
18 14 0.29
19 13 0.27
20 12 0.24
21 3 0.06
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (19 bp):
AAAATAAAATTAAATAAAT
Found at i:22971 original size:23 final size:23
Alignment explanation
Indices: 22917--22973 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
22907 TGTCCATCCT
*
22917 TGCTGACTAGACCTTCTAGAAGC
1 TGCTGACTGGACCTTCTAGAAGC
22940 TGCTGACTGGACCTTCTAGAAGC
1 TGCTGACTGGACCTTCTAGAAGC
22963 TGCTGACTGGA
1 TGCTGACTGGA
22974 TGCCACGTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (23 bp):
TGCTGACTGGACCTTCTAGAAGC
Found at i:24265 original size:42 final size:42
Alignment explanation
Indices: 24143--24267 Score: 225
Period size: 42 Copynumber: 3.0 Consensus size: 42
24133 TAAGAGACTG
* *
24143 GATG-CTTCAATCTGCCCCATGATCGAGGTAAGAGATTGAAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
24184 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
24226 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
1 GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
24268 AAGAAAGCTT
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
41 4 0.05
42 77 0.95
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (42 bp):
GATGTCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGAT
Found at i:27613 original size:27 final size:26
Alignment explanation
Indices: 27578--27674 Score: 90
Period size: 27 Copynumber: 3.7 Consensus size: 26
27568 CATACAATAT
*
27578 AAAGTAAAGCAAAGCAAGATAAATAGC
1 AAAGCAAAGCAAAGCAA-ATAAATAGC
* *
27605 AAAGCAAAGCAGAGCAATATAAAAAGC
1 AAAGCAAAGCAAAGCAA-ATAAATAGC
* *
27632 AAAGAAAATCAAAGCAAATAAA-AG-
1 AAAGCAAAGCAAAGCAAATAAATAGC
**
27656 AAATATAAAGCAAAGCAAA
1 AAA-GCAAAGCAAAGCAAA
27675 GCACAGCACG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
24 3 0.05
25 14 0.24
26 5 0.08
27 37 0.63
ACGTcount: A:0.64, C:0.11, G:0.15, T:0.09
Consensus pattern (26 bp):
AAAGCAAAGCAAAGCAAATAAATAGC
Found at i:27707 original size:32 final size:33
Alignment explanation
Indices: 27602--27748 Score: 120
Period size: 32 Copynumber: 4.5 Consensus size: 33
27592 CAAGATAAAT
*
27602 AGCAAAGCAAAGC-AGAGCAATATAAAAAGCAA
1 AGCAAAGCAAAGCAAAAGCAATATAAAAAGCAA
* * ** * *
27634 AGAAAATCAAAGCAAATAAAAGAAATATAAAGCAA
1 AGCAAAGCAAAGCAAA-AGCA-ATATAAAAAGCAA
* ** *
27669 AGCAAAGCACAGCACGA-CAATATAAAAAGAAA
1 AGCAAAGCAAAGCAAAAGCAATATAAAAAGCAA
* * *
27701 AGCAAAGCAAAACAATATCAATAT-AAAAGCAA
1 AGCAAAGCAAAGCAAAAGCAATATAAAAAGCAA
*
27733 AGCAAAACAAAGCAAA
1 AGCAAAGCAAAGCAAA
27749 GCACAACAAA
Statistics
Matches: 87, Mismatches: 24, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
32 54 0.62
33 8 0.09
34 3 0.03
35 22 0.25
ACGTcount: A:0.63, C:0.15, G:0.14, T:0.08
Consensus pattern (33 bp):
AGCAAAGCAAAGCAAAAGCAATATAAAAAGCAA
Found at i:27709 original size:27 final size:27
Alignment explanation
Indices: 27667--27821 Score: 104
Period size: 27 Copynumber: 5.8 Consensus size: 27
27657 AATATAAAGC
* * **
27667 AAAGCAAAGCACAGCACGACAATATAA
1 AAAGAAAAGCAAAGCAAAACAATATAA
*
27694 AAAGAAAAGCAAAGCAAAACAATATCA
1 AAAGAAAAGCAAAGCAAAACAATATAA
* * **
27721 ATATAAAAGCAAAGCAAAACAA-A-GC
1 AAAGAAAAGCAAAGCAAAACAATATAA
* * *
27746 AAAGCACAA-CAAAGCAATATAA-A-AA
1 AAAG-AAAAGCAAAGCAAAACAATATAA
* *
27771 GCAAAGCAAAGCAAAGCAAAACGATATAA
1 --AAAGAAAAGCAAAGCAAAACAATATAA
* *
27800 AAAGCAAAGCAAAGCACAACAA
1 AAAGAAAAGCAAAGCAAAACAA
27822 AGCAAAGCAA
Statistics
Matches: 99, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
25 14 0.14
26 6 0.06
27 76 0.77
28 1 0.01
29 2 0.02
ACGTcount: A:0.63, C:0.18, G:0.13, T:0.06
Consensus pattern (27 bp):
AAAGAAAAGCAAAGCAAAACAATATAA
Found at i:27728 original size:74 final size:73
Alignment explanation
Indices: 27626--27858 Score: 201
Period size: 74 Copynumber: 3.1 Consensus size: 73
27616 GAGCAATATA
* * *
27626 AAAAGCAAAG-AAAATCAAAGCAAATAAAAG-AAA-TATAAAGCAAAGCAAAGCACAGC-ACGAC
1 AAAAGCAAAGCAAAATCAAAGCAAATAAAAGCAAAGCA-AAA-CAAAGCAAAGCACAACAAAG-C
27687 AATATAAAAAG
63 AATATAAAAAG
*
27698 AAAAGCAAAGCAAAA-CAATATCAATATAAAAGCAAAGCAAAACAAAGCAAAGCACAACAAAGCA
1 AAAAGCAAAGCAAAATCAA-AGCAA-ATAAAAGCAAAGCAAAACAAAGCAAAGCACAACAAAGCA
27762 ATATAAAAAG
64 ATATAAAAAG
* * * *
27772 CAAAGCAAAGC-AAAGCAAAACGATATAAAAAGCAAAGCAAAGCACAACAAAGCAAAGCA-AAGC
1 AAAAGCAAAGCAAAATCAAAGC-AAAT-AAAAGCAAAGC--A--A-AACAAAGCAAAGCACAA-C
* *
27835 GAAGCAACATAAAAAG
58 AAAGCAATATAAAAAG
*
27851 CAAAGCAA
1 AAAAGCAA
27859 TTTAAAATGC
Statistics
Matches: 137, Mismatches: 9, Indels: 23
0.81 0.05 0.14
Matches are distributed among these distances:
72 13 0.09
73 15 0.11
74 59 0.43
75 8 0.06
76 2 0.01
78 3 0.02
79 37 0.27
ACGTcount: A:0.63, C:0.17, G:0.14, T:0.06
Consensus pattern (73 bp):
AAAAGCAAAGCAAAATCAAAGCAAATAAAAGCAAAGCAAAACAAAGCAAAGCACAACAAAGCAAT
ATAAAAAG
Found at i:27778 original size:32 final size:32
Alignment explanation
Indices: 27736--27826 Score: 141
Period size: 32 Copynumber: 2.9 Consensus size: 32
27726 AAAGCAAAGC
27736 AAAA-CAAAGCAAAGCACAACAAAGCAATATA
1 AAAAGCAAAGCAAAGCACAACAAAGCAATATA
* *
27767 AAAAGCAAAGCAAAGCA-AAGCAAAACGATATA
1 AAAAGCAAAGCAAAGCACAA-CAAAGCAATATA
27799 AAAAGCAAAGCAAAGCACAACAAAGCAA
1 AAAAGCAAAGCAAAGCACAACAAAGCAA
27827 AGCAAAGCGA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
31 6 0.11
32 45 0.85
33 2 0.04
ACGTcount: A:0.64, C:0.19, G:0.13, T:0.04
Consensus pattern (32 bp):
AAAAGCAAAGCAAAGCACAACAAAGCAATATA
Found at i:27809 original size:79 final size:79
Alignment explanation
Indices: 27694--27858 Score: 233
Period size: 79 Copynumber: 2.1 Consensus size: 79
27684 GACAATATAA
* * * *
27694 AAAGAAAAGCAAAGCAAAACAATATCAATATAAAAGCAAAGCAAAACAAAGCAAAGCACAA-CAA
1 AAAGCAAAGCAAAGCAAAACAATATAAAAAGAAAAGCAAAGCAAAACAAAGCAAAGCA-AAGCAA
*
27758 AGCAATATAAAAAGC
65 AGCAACATAAAAAGC
* * * *
27773 AAAGCAAAGCAAAGCAAAACGATATAAAAAGCAAAGCAAAGCACAACAAAGCAAAGCAAAGCGAA
1 AAAGCAAAGCAAAGCAAAACAATATAAAAAGAAAAGCAAAGCAAAACAAAGCAAAGCAAAGCAAA
27838 GCAACATAAAAAGC
66 GCAACATAAAAAGC
27852 AAAGCAA
1 AAAGCAA
27859 TTTAAAATGC
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
78 2 0.03
79 74 0.97
ACGTcount: A:0.63, C:0.18, G:0.14, T:0.05
Consensus pattern (79 bp):
AAAGCAAAGCAAAGCAAAACAATATAAAAAGAAAAGCAAAGCAAAACAAAGCAAAGCAAAGCAAA
GCAACATAAAAAGC
Found at i:27851 original size:37 final size:35
Alignment explanation
Indices: 27731--27854 Score: 97
Period size: 37 Copynumber: 3.2 Consensus size: 35
27721 ATATAAAAGC
* *
27731 AAAGCAAAACAAAGCAAAGCACAACAAAGCAATATAA
1 AAAGC-AAACAAAGCAAAGCA-AACGAAGCAACATAA
**
27768 AAAGCAAAGCAAAGCAAAGCAAAACGATATAAAAAGCA-AA
1 AAAGCAAA-CAAAGCAAAGC-AAACG--A-AGCAA-CATAA
27808 GCAAAGCACAACAAAGCAAAGCAAAGCGAAGCAACATAA
1 --AAAGCA-AACAAAGCAAAGCAAA-CGAAGCAACATAA
27847 AAAGCAAA
1 AAAGCAAA
27855 GCAATTTAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 23
0.71 0.06 0.23
Matches are distributed among these distances:
36 5 0.07
37 25 0.36
38 3 0.04
39 6 0.09
40 6 0.09
41 4 0.06
42 19 0.27
43 2 0.03
ACGTcount: A:0.63, C:0.19, G:0.15, T:0.04
Consensus pattern (35 bp):
AAAGCAAACAAAGCAAAGCAAACGAAGCAACATAA
Found at i:27851 original size:42 final size:42
Alignment explanation
Indices: 27699--27858 Score: 151
Period size: 42 Copynumber: 4.0 Consensus size: 42
27689 TATAAAAAGA
*
27699 AAAGCAAAGCAAAACAATATCAATAT-AAAAGCAAAGCAAAAC
1 AAAGCAAAGCAAAACAATAGCAATATAAAAAGCAAAGC-AAAC
*
27741 AAAGCAAAGCACAACAA-AGCAATATAAAAAGCAAAG----C
1 AAAGCAAAGCAAAACAATAGCAATATAAAAAGCAAAGCAAAC
* *
27778 AAAGCAAAGCAAAACGATA-TAA-A-AAGCAAAGCAAAGCACAAC
1 AAAGCAAAGCAAAACAATAGCAATATAA--AAAGCAAAGCA-AAC
* * *
27820 AAAGCAAAGCAAAGCGA-AGCAACATAAAAAGCAAAGCAA
1 AAAGCAAAGCAAAACAATAGCAATATAAAAAGCAAAGCAA
27859 TTTAAAATGC
Statistics
Matches: 99, Mismatches: 7, Indels: 25
0.76 0.05 0.19
Matches are distributed among these distances:
35 2 0.02
36 1 0.01
37 27 0.27
38 1 0.01
41 9 0.09
42 56 0.57
43 1 0.01
44 2 0.02
ACGTcount: A:0.62, C:0.18, G:0.14, T:0.06
Consensus pattern (42 bp):
AAAGCAAAGCAAAACAATAGCAATATAAAAAGCAAAGCAAAC
Found at i:27851 original size:64 final size:64
Alignment explanation
Indices: 27736--27875 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 64
27726 AAAGCAAAGC
** *
27736 AAAA-CAAAGCAAAGCACAACAAAGCAATATAAAAAGCAAAGCAAAGCAAAGCAAAACGATATA
1 AAAAGCAAAGCAAAGCACAACAAAGCAATATAAAAAGCAAAGCAAAAAAAAGCAAAACAATATA
** * * *
27799 AAAAGCAAAGCAAAGCACAACAAAGCAA-A-GCAAAGCGAAGCAACATAAAAAGCAAAGCAATTT
1 AAAAGCAAAGCAAAGCACAACAAAGCAATATAAAAAGCAAAGCAA-A-AAAAAGCAAAACAATAT
27862 A
64 A
*
27863 AAATGCAAAGCAA
1 AAAAGCAAAGCAA
27876 CATGTTGACA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
62 11 0.17
63 6 0.09
64 48 0.74
ACGTcount: A:0.61, C:0.18, G:0.14, T:0.06
Consensus pattern (64 bp):
AAAAGCAAAGCAAAGCACAACAAAGCAATATAAAAAGCAAAGCAAAAAAAAGCAAAACAATATA
Found at i:27858 original size:27 final size:27
Alignment explanation
Indices: 27726--27858 Score: 129
Period size: 27 Copynumber: 5.1 Consensus size: 27
27716 TATCAATATA
*
27726 AAAGCAAAGCAA-A-ACAAAGCAAAGC
1 AAAGCAAAGCAACATAAAAAGCAAAGC
*
27751 ACAA-CAAAGCAATATAAAAAGCAAAGC
1 A-AAGCAAAGCAACATAAAAAGCAAAGC
*
27778 AAAGCAAAGCAAAACGAT-ATAA--AAAGC
1 AAAGCAAAGC--AAC-ATAAAAAGCAAAGC
*
27805 AAAGCAAAGC-ACA-ACAAAGCAAAGC
1 AAAGCAAAGCAACATAAAAAGCAAAGC
*
27830 AAAGCGAAGCAACATAAAAAGCAAAGC
1 AAAGCAAAGCAACATAAAAAGCAAAGC
27857 AA
1 AA
27859 TTTAAAATGC
Statistics
Matches: 89, Mismatches: 7, Indels: 22
0.75 0.06 0.19
Matches are distributed among these distances:
23 3 0.03
24 2 0.02
25 23 0.26
26 8 0.09
27 46 0.52
29 5 0.06
30 2 0.02
ACGTcount: A:0.62, C:0.19, G:0.15, T:0.04
Consensus pattern (27 bp):
AAAGCAAAGCAACATAAAAAGCAAAGC
Found at i:27875 original size:5 final size:5
Alignment explanation
Indices: 27578--27841 Score: 97
Period size: 5 Copynumber: 50.4 Consensus size: 5
27568 CATACAATAT
* ** * **
27578 AAAGT AAAGC AAAGC AAGATA AATAGC AAAGC AAAGC AGAGC AATATAA
1 AAAGC AAAGC AAAGC AA-AGC AA-AGC AAAGC AAAGC AAAGC AA-A-GC
* * ** **
27627 AAAGC AAAGA AAATC AAAGC AAATA AAAG- AAATAT AAAGC AAAGC AAAGC
1 AAAGC AAAGC AAAGC AAAGC AAAGC AAAGC AAA-GC AAAGC AAAGC AAAGC
* * ** * * * **
27677 ACAGC -ACGAC AATATAA AAAGA AAAGC AAAGC AAAAC AATATC AATATA
1 AAAGC AAAG-C AA-A-GC AAAGC AAAGC AAAGC AAAGC AA-AGC AA-AGC
* **
27726 AAAGC AAAGC AAAAC AAAGC AAAGC ACAA-C AAAGC AATATAA AAAGC
1 AAAGC AAAGC AAAGC AAAGC AAAGC A-AAGC AAAGC AA-A-GC AAAGC
* *
27773 AAAGC AAAGC AAAGC AAAAC GATATA-A AAAGC AAAGC AAAGC ACAA-C
1 AAAGC AAAGC AAAGC AAAGC -A-A-AGC AAAGC AAAGC AAAGC A-AAGC
*
27820 AAAGC AAAGC AAAGC GAAGC AA
1 AAAGC AAAGC AAAGC AAAGC AA
27842 CATAAAAAGC
Statistics
Matches: 193, Mismatches: 46, Indels: 40
0.69 0.16 0.14
Matches are distributed among these distances:
4 9 0.05
5 146 0.76
6 30 0.16
7 7 0.04
8 1 0.01
ACGTcount: A:0.62, C:0.16, G:0.15, T:0.07
Consensus pattern (5 bp):
AAAGC
Found at i:28964 original size:15 final size:15
Alignment explanation
Indices: 28944--28995 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
28934 TTTAGTAATA
28944 TTGCTTTATATTATT
1 TTGCTTTATATTATT
* *
28959 TTGCTTTGCT-TTATA
1 TTGCTTT-ATATTATT
*
28974 TTGCTTTATATTACT
1 TTGCTTTATATTATT
28989 TTGCTTT
1 TTGCTTT
28996 GTTTTATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
14 1 0.03
15 28 0.93
16 1 0.03
ACGTcount: A:0.15, C:0.12, G:0.10, T:0.63
Consensus pattern (15 bp):
TTGCTTTATATTATT
Found at i:29019 original size:25 final size:25
Alignment explanation
Indices: 28991--29049 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
28981 ATATTACTTT
*
28991 GCTTTGTTTTATATT-TTTTTGCTTC
1 GCTTTGTTTTATATTACTTTT-CTTC
** *
29016 GCTTTACTTTATATTACTTTTCTTT
1 GCTTTGTTTTATATTACTTTTCTTC
29041 GCTTTGTTT
1 GCTTTGTTT
29050 GCTTTATATT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
25 23 0.85
26 4 0.15
ACGTcount: A:0.10, C:0.14, G:0.10, T:0.66
Consensus pattern (25 bp):
GCTTTGTTTTATATTACTTTTCTTC
Found at i:29021 original size:20 final size:20
Alignment explanation
Indices: 28976--29021 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
28966 GCTTTATATT
*
28976 GCTTTATATTACTTTGCTTT
1 GCTTTATATTACTTTGCTTC
* **
28996 GTTTTATATTTTTTTGCTTC
1 GCTTTATATTACTTTGCTTC
29016 GCTTTA
1 GCTTTA
29022 CTTTATATTA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.13, C:0.13, G:0.11, T:0.63
Consensus pattern (20 bp):
GCTTTATATTACTTTGCTTC
Found at i:29083 original size:25 final size:24
Alignment explanation
Indices: 29037--29085 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
29027 TATTACTTTT
*
29037 CTTTGCTTTGTTTGCTTTATATTA
1 CTTTGCTTTGTTTGCTTCATATTA
*
29061 CTTTGTTTTGCTTTGCTTCATATTA
1 CTTTGCTTTG-TTTGCTTCATATTA
29086 TTTTATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.12, C:0.14, G:0.12, T:0.61
Consensus pattern (24 bp):
CTTTGCTTTGTTTGCTTCATATTA
Found at i:29100 original size:25 final size:24
Alignment explanation
Indices: 29046--29103 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
29036 TCTTTGCTTT
* * *
29046 GTTTGCTTTATATTACTTTGTTTT
1 GTTTGCTTCATATTACTTTATTTA
*
29070 GCTTTGCTTCATATTATTTTATATTA
1 G-TTTGCTTCATATTACTTTAT-TTA
29096 GTTTGCTT
1 GTTTGCTT
29104 TGCTTTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.04
25 24 0.86
26 3 0.11
ACGTcount: A:0.16, C:0.10, G:0.12, T:0.62
Consensus pattern (24 bp):
GTTTGCTTCATATTACTTTATTTA
Found at i:29123 original size:21 final size:21
Alignment explanation
Indices: 29087--29150 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
29077 TTCATATTAT
*
29087 TTTATA-TTAGTTTGCTTTGC
1 TTTATATTTACTTTGCTTTGC
29107 TTTATATTTACTTTGCTTTGC
1 TTTATATTTACTTTGCTTTGC
* *
29128 CTTATATTT-CTTTACTTTGC
1 TTTATATTTACTTTGCTTTGC
29148 TTT
1 TTT
29151 GCTTTGTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
20 18 0.46
21 21 0.54
ACGTcount: A:0.14, C:0.14, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTATATTTACTTTGCTTTGC
Found at i:29255 original size:36 final size:36
Alignment explanation
Indices: 29203--29292 Score: 105
Period size: 36 Copynumber: 2.5 Consensus size: 36
29193 ATATTGCTTA
*
29203 GCTTT-GCTTTAT-TTACTTTATACT-TCTTTACTTT
1 GCTTTGGCTTTATATTACTTTATAATAT-TTTACTTT
*
29237 GCTTTGGCTTTATATTACTTTATAATATTTTGCTTT
1 GCTTTGGCTTTATATTACTTTATAATATTTTACTTT
29273 GCTTTGTTTGCTTTATATTA
1 GCTTTG---GCTTTATATTA
29293 TTTTGCTTTC
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
34 5 0.10
35 7 0.15
36 24 0.50
37 1 0.02
39 11 0.23
ACGTcount: A:0.17, C:0.13, G:0.10, T:0.60
Consensus pattern (36 bp):
GCTTTGGCTTTATATTACTTTATAATATTTTACTTT
Found at i:29297 original size:29 final size:29
Alignment explanation
Indices: 29008--29257 Score: 154
Period size: 29 Copynumber: 8.9 Consensus size: 29
28998 TTTATATTTT
* * *
29008 TTTGCTTCGCTTTACTTTATATTACTTTTC
1 TTTGCTTTG-TTTGCTTTATATTACTTTGC
*
29038 TTTGCTTTGTTTGCTTTATATTACTTTGT
1 TTTGCTTTGTTTGCTTTATATTACTTTGC
* **
29067 TTTGC----TTTGCTTCATATTA-TTTTA
1 TTTGCTTTGTTTGCTTTATATTACTTTGC
29091 TATTAG-TTTGCTTTGCTTTATATTTACTTTGC
1 T-TT-GCTTTG-TTTGCTTTATA-TTACTTTGC
* * * *
29123 TTTGC-CT-TAT-ATTTCT-TTACTTTGC
1 TTTGCTTTGTTTGCTTTATATTACTTTGC
*
29148 TTTGCTTTGTTTGCTTTATATTTCTTTGC
1 TTTGCTTTGTTTGCTTTATATTACTTTGC
* * * *
29177 TATGGC-TT-TTTACTTTATATTGCTTAGC
1 T-TTGCTTTGTTTGCTTTATATTACTTTGC
* * *
29205 TTTGCTTTATTTACTTTATACTT-CTTTAC
1 TTTGCTTTGTTTGCTTTATA-TTACTTTGC
29234 TTTGCTTTG---GCTTTATATTACTTT
1 TTTGCTTTGTTTGCTTTATATTACTTT
29258 ATAATATTTT
Statistics
Matches: 173, Mismatches: 28, Indels: 42
0.71 0.12 0.17
Matches are distributed among these distances:
24 4 0.02
25 31 0.18
26 13 0.08
27 9 0.05
28 26 0.15
29 56 0.32
30 25 0.14
31 5 0.03
32 4 0.02
ACGTcount: A:0.14, C:0.15, G:0.10, T:0.61
Consensus pattern (29 bp):
TTTGCTTTGTTTGCTTTATATTACTTTGC
Found at i:29312 original size:25 final size:24
Alignment explanation
Indices: 29270--29316 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
29260 AATATTTTGC
*
29270 TTTGCTTTGTTTGCTTTATATTAT
1 TTTGCTTTCTTTGCTTTATATTAT
29294 TTTGCTTTCTATTGCTTTATATT
1 TTTGCTTTCT-TTGCTTTATATT
29317 TTTAAGTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.13, C:0.11, G:0.11, T:0.66
Consensus pattern (24 bp):
TTTGCTTTCTTTGCTTTATATTAT
Found at i:29503 original size:27 final size:29
Alignment explanation
Indices: 29445--29506 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 29
29435 TAGATGGCTT
*
29445 TAATT-TATTTAATGATTATTTTTTTATT
1 TAATTGTATTTAATGATTATTTTTTTATA
29473 TAATTGTATTT-AT-ATTATTGTTTTTA-A
1 TAATTGTATTTAATGATTATT-TTTTTATA
29500 TAATTGT
1 TAATTGT
29507 TTTTCCTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 13 0.42
28 13 0.42
29 5 0.16
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (29 bp):
TAATTGTATTTAATGATTATTTTTTTATA
Found at i:29507 original size:13 final size:14
Alignment explanation
Indices: 29465--29510 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
29455 AATGATTATT
*
29465 TTTTTATTTAATTG
1 TTTTTATATAATTG
* *
29479 TATTTATATTATTG
1 TTTTTATATAATTG
29493 TTTTTA-ATAATTG
1 TTTTTATATAATTG
29506 TTTTT
1 TTTTT
29511 CCTAAAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.70
Consensus pattern (14 bp):
TTTTTATATAATTG
Found at i:31813 original size:10 final size:10
Alignment explanation
Indices: 31800--31886 Score: 54
Period size: 10 Copynumber: 8.7 Consensus size: 10
31790 TTATACTACT
31800 TTGCTTTATA
1 TTGCTTTATA
31810 TTGCTTTATA
1 TTGCTTTATA
** *
31820 TTATTTTGCT-
1 TTGCTTT-ATA
*
31830 TTGCTTTGCT-
1 TTGCTTT-ATA
* *
31840 TTACTTTCTA
1 TTGCTTTATA
*
31850 TTGCTTTGCT-
1 TTGCTTT-ATA
31860 TTGCTTTATA
1 TTGCTTTATA
31870 TTGCTTTATA
1 TTGCTTTATA
*
31880 TTACTTT
1 TTGCTTT
31887 GCTTTGCTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
9 3 0.05
10 58 0.91
11 3 0.05
ACGTcount: A:0.14, C:0.14, G:0.10, T:0.62
Consensus pattern (10 bp):
TTGCTTTATA
Found at i:31832 original size:5 final size:5
Alignment explanation
Indices: 31824--32805 Score: 130
Period size: 5 Copynumber: 197.6 Consensus size: 5
31814 TTTATATTAT
* *
31824 TTTGC TTTGC TTTGC TTTAC TTT-C TATTGC TTTGC TTTGC TTT-A TATTGC
1 TTTGC TTTGC TTTGC TTTGC TTTGC T-TTGC TTTGC TTTGC TTTGC T-TTGC
* * * **
31874 TTT-A TATTAC TTTGC TTTGC TTTGC TTT-C TATTGC TTT-A TATTTA
1 TTTGC T-TTGC TTTGC TTTGC TTTGC TTTGC T-TTGC TTTGC T-TTGC
* * * * * * *
31919 TTTGC TTTGC TTTAC TTT-A TAGTAC TTTGT TTTGT TTTG- TTTGC TTT-A
1 TTTGC TTTGC TTTGC TTTGC T-TTGC TTTGC TTTGC TTTGC TTTGC TTTGC
* * * * *
31967 TATTAC TTTGC TTTAC TTTGC TTT-A TATTGC TTT-A TATTTC TTTGC
1 T-TTGC TTTGC TTTGC TTTGC TTTGC T-TTGC TTTGC T-TTGC TTTGC
* * * * * *
32013 TTTGC TTT-A TATTAC TTT-A TATTGC TTTGC TTTGC CTT-A TATTAC
1 TTTGC TTTGC T-TTGC TTTGC T-TTGC TTTGC TTTGC TTTGC T-TTGC
* * * *
32058 TTTG- TTGTGC TTT-A TATTGC TTTGC TTTTC TTT-A TATTGC TTT-A
1 TTTGC TT-TGC TTTGC T-TTGC TTTGC TTTGC TTTGC T-TTGC TTTGC
* * * ** * *
32102 TATTAC TTTGC TTTGC CTT-A TATCAC TTTGC TTTGC TTTGC TGT-A TATTGC
1 T-TTGC TTTGC TTTGC TTTGC T-TTGC TTTGC TTTGC TTTGC TTTGC T-TTGC
* * * * * * *
32153 TTT-A TATTTC TTTTC TTTGC TTTAC TTT-A TATTGC TTT-A TATTAC
1 TTTGC T-TTGC TTTGC TTTGC TTTGC TTTGC T-TTGC TTTGC T-TTGC
* * **
32198 TTTGC TTTGC TTTG- TTTGC TTT-A TATTAC TTTGC TTTGC TTTG- TTTTA
1 TTTGC TTTGC TTTGC TTTGC TTTGC T-TTGC TTTGC TTTGC TTTGC TTTGC
* * * * *
32246 TATTTC ATTGC TTTGC TTT-A TATTAC TTTGC TTTGC TTTG- TTTGC TTT-A
1 T-TTGC TTTGC TTTGC TTTGC T-TTGC TTTGC TTTGC TTTGC TTTGC TTTGC
* * * * * * * *
32295 TATTAC TTTGC TTCGC ATTGC TTT-A TATTGC TTTGC TTTAC CTT-A TATTAC
1 T-TTGC TTTGC TTTGC TTTGC TTTGC T-TTGC TTTGC TTTGC TTTGC T-TTGC
* * *
32346 TTTGC TTT-A TATTAC TTTGC TTTG- TTGTGC TTT-A TATTGC TTTGC
1 TTTGC TTTGC T-TTGC TTTGC TTTGC TT-TGC TTTGC T-TTGC TTTGC
** * * * * *
32391 TTTGC -TTAA TATTGC TTT-A TATTAC TTTGC TTTGC CTT-A TATTAC
1 TTTGC TTTGC T-TTGC TTTGC T-TTGC TTTGC TTTGC TTTGC T-TTGC
* * * * * * *
32436 TTTGC TTTGA TTTGC TTT-A TATTGA TTT-A TATTTC TTAGC TTTGC TTTAC
1 TTTGC TTTGC TTTGC TTTGC T-TTGC TTTGC T-TTGC TTTGC TTTGC TTTGC
* * * * **
32486 TTT-A TATTAC TTTGC TTTGC TTTG- TTTGC TAT-A TATTAA TTTGC TTTGC
1 TTTGC T-TTGC TTTGC TTTGC TTTGC TTTGC TTTGC T-TTGC TTTGC TTTGC
* * * *
32535 TTTGC TTTGC TTT-A TATTGC TTT-A TATTGC TTT-A TATTAC TTTGC
1 TTTGC TTTGC TTTGC T-TTGC TTTGC T-TTGC TTTGC T-TTGC TTTGC
* * * * * ** *
32580 TTTGC CTT-A TATTAC TTTTC TTTAC TTTGC TTTGC TTTAT TTTGC TTTAC
1 TTTGC TTTGC T-TTGC TTTGC TTTGC TTTGC TTTGC TTTGC TTTGC TTTGC
* * * ** * *
32630 TTT-A TATTGA TTT-A TATTAT TTTGC TTTGC TTTG- TTTGC TTT-A TATTAC
1 TTTGC T-TTGC TTTGC T-TTGC TTTGC TTTGC TTTGC TTTGC TTTGC T-TTGC
** * *
32679 TTTGC TTTGC TTTGC TTTG- TTTTA TATTTC TTTGC TTTGC TTTGG TTTGC
1 TTTGC TTTGC TTTGC TTTGC TTTGC T-TTGC TTTGC TTTGC TTTGC TTTGC
* * * * *
32729 TTTGC TTTGC TTT-A TATTG- TATT-A TATTTC TTTGC TTTAC TTT-A
1 TTTGC TTTGC TTTGC T-TTGC T-TTGC T-TTGC TTTGC TTTGC TTTGC
*
32773 TTTGC TTT-A TATTGC TTTGC TTTGC TTTGC TTT
1 TTTGC TTTGC T-TTGC TTTGC TTTGC TTTGC TTT
32806 ATATTGTTTA
Statistics
Matches: 714, Mismatches: 161, Indels: 204
0.66 0.15 0.19
Matches are distributed among these distances:
4 76 0.11
5 576 0.81
6 62 0.09
ACGTcount: A:0.14, C:0.14, G:0.12, T:0.61
Consensus pattern (5 bp):
TTTGC
Found at i:31832 original size:30 final size:30
Alignment explanation
Indices: 31798--32844 Score: 376
Period size: 30 Copynumber: 34.6 Consensus size: 30
31788 CTTTATACTA
*
31798 CTTTGCTTTATATTGCTTTATATTATTTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
* * * *
31828 CTTTGCTTTGCT-TTACTTTCTATTGCTTTG
1 CTTTGCTTT-ATATTGCTTTATATTACTTTG
31858 CTTTGCTTTATATTGCTTTATATTACTTTGCTTTG
1 CTTTGCTTTATATTGCTTTATATTA-----CTTTG
*
31893 CTTTGCTTTCTATTGCTTTATATTTA-TTTG
1 CTTTGCTTTATATTGCTTTATAT-TACTTTG
*
31923 CTTTGC-TT-TA---CTTTATAGTACTTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
* * *
31948 TTTTGTTTTGT-TTGCTTTATATTACTTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
*
31977 CTTTACTTTGCTTTATATTGCTTTATATTTCTTTG
1 -----CTTTGCTTTATATTGCTTTATATTACTTTG
* *
32012 CTTTGCTTTATATTACTTTATATTGCTTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
*
32042 CTTTGCCTTATATTACTTTGTTGTGCTTTATATTGCTTTG
1 CTTTG-CTT-TA-TA------T-TGCTTTATATTACTTTG
*
32082 CTTTTCTTTATATTGCTTTATATTACTTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
* *
32112 CTTTGCCTTATA-T-C---ACT-TTGCTTTG
1 CTTTGCTTTATATTGCTTTA-TATTACTTTG
* *
32137 CTTTGCTGTATATTGCTTTATATTTCTTTTCTTTG
1 CTTTGCTTTATATTGCTTTATA-----TTACTTTG
*
32172 CTTTACTTTATATTGCTTTATATTACTTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
*
32202 CTTTGCTTTGT-TTGCTTTATATTACTTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
* * *
32231 CTTTGC----T-TTGTTTTATATTTCATTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
* * *
32256 CTTTGCTTTATATTACTTTGCT-TTGCTTTG
1 CTTTGCTTTATATTGCTTT-ATATTACTTTG
* * *
32286 -TTTGCTTTATATTACTTTGCTTCGCATTGCTTT-
1 CTTTGCTTTATATTGCTTT--AT---ATTACTTTG
* *** * *
32319 ATATTGCTTTGCTTTACCTTATATTACTTTG
1 CT-TTGCTTTATATTGCTTTATATTACTTTG
* * *
32350 CTTT-ATATTACT-TTGCTTTGT-TGTGCTTT-
1 CTTTGCT-TTA-TATTGCTTTATAT-TACTTTG
* *** * *
32379 ATATTGCTTTGCTTTGCTTAATATTGCTTT-
1 CT-TTGCTTTATATTGCTTTATATTACTTTG
* * *** *
32409 ATATTACTTTGCTTTGCCTTATATTACTTTG
1 CT-TTGCTTTATATTGCTTTATATTACTTTG
* * *
32440 CTTTGATTTGCTTTATATTGATTTATATTTCTTAG
1 C-----TTTGCTTTATATTGCTTTATATTACTTTG
32475 CTTTGC-TT-TA---CTTTATATTACTTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
* * *
32500 CTTTGCTTTGT-TTGCTATATATTAATTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
*
32529 CTTTGCTTTGCT-TTGC-TT-TA-TA-----
1 CTTTGCTTT-ATATTGCTTTATATTACTTTG
32551 --TTGCTTTATATTGCTTTATATTACTTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
* * *
32579 CTTTGCCTTATATTACTTT-TCTTTACTTTG
1 CTTTGCTTTATATTGCTTTAT-ATTACTTTG
*
32609 CTTTGCTTTATTTTGCTTTACT-TTA-TATTG
1 CTTTGCTTTATATTGCTTTA-TATTACT-TTG
* * * *
32639 ATTT-ATATTATTTTGC----T-TTGCTTTG
1 CTTTGCT-TTATATTGCTTTATATTACTTTG
* * *
32664 -TTTGCTTTATATTACTTTGCT-TTGCTTTG
1 CTTTGCTTTATATTGCTTT-ATATTACTTTG
* * * *
32693 CTTTGTTTTATATTTCTTTGCTTTGCTTTGGTTTGCTTTG
1 CTTTGCTTTATA-----TTGC-TT--TAT--ATTACTTTG
*
32733 CTTTGCTTTATATTG-TATTATATTTCTTTG
1 CTTTGCTTTATATTGCT-TTATATTACTTTG
* *
32763 CTTTACTTTAT-TTGCTTTATATTGCTTTGCTTTG
1 CTTTGCTTTATATTGCTTTATA-----TTACTTTG
32797 CTTTGCTTTATATTG-TTTATATTACTTTG
1 CTTTGCTTTATATTGCTTTATATTACTTTG
* *
32826 CTTTACTTTATATTACTTT
1 CTTTGCTTTATATTGCTTT
32845 GTTTTGCTTC
Statistics
Matches: 788, Mismatches: 110, Indels: 238
0.69 0.10 0.21
Matches are distributed among these distances:
19 1 0.00
20 11 0.01
21 2 0.00
22 2 0.00
23 2 0.00
24 12 0.02
25 80 0.10
26 7 0.01
27 5 0.01
28 7 0.01
29 130 0.16
30 303 0.38
31 9 0.01
32 5 0.01
33 4 0.01
34 40 0.05
35 114 0.14
36 5 0.01
37 3 0.00
38 3 0.00
39 4 0.01
40 39 0.05
ACGTcount: A:0.14, C:0.14, G:0.11, T:0.61
Consensus pattern (30 bp):
CTTTGCTTTATATTGCTTTATATTACTTTG
Found at i:31838 original size:25 final size:25
Alignment explanation
Indices: 31785--31871 Score: 97
Period size: 25 Copynumber: 3.5 Consensus size: 25
31775 TTTAGTAATA
* * *
31785 TTGCTTTATACTACTTTGCTTT-AT
1 TTGCTTTATATTATTTTGCTTTGCT
31809 ATTGCTTTATATTATTTTGCTTTGCT
1 -TTGCTTTATATTATTTTGCTTTGCT
* *
31835 TTGCTTTACT-TTCTATTGCTTTGCT
1 TTGCTTTA-TATTATTTTGCTTTGCT
31860 TTGCTTTATATT
1 TTGCTTTATATT
31872 GCTTTATATT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
24 1 0.02
25 51 0.94
26 2 0.04
ACGTcount: A:0.14, C:0.15, G:0.10, T:0.61
Consensus pattern (25 bp):
TTGCTTTATATTATTTTGCTTTGCT
Found at i:31853 original size:20 final size:20
Alignment explanation
Indices: 31830--32966 Score: 219
Period size: 20 Copynumber: 58.0 Consensus size: 20
31820 TTATTTTGCT
*
31830 TTGCTTTGCTTTACTTTCTA
1 TTGCTTTGCTTTACTTTATA
*
31850 TTGCTTTGCTTTGCTTTATA
1 TTGCTTTGCTTTACTTTATA
*
31870 TTGC-TT--TATA--TTACT-
1 TTGCTTTGCTTTACTTTA-TA
* *
31885 TTGCTTTGCTTTGCTTTCTA
1 TTGCTTTGCTTTACTTTATA
*
31905 TTGC-TT--TATA-TTTAT-
1 TTGCTTTGCTTTACTTTATA
31920 TTGCTTTGCTTTACTTTATA
1 TTGCTTTGCTTTACTTTATA
* * *
31940 GTACTTTG-TTT--TGT-T-
1 TTGCTTTGCTTTACTTTATA
31955 TTG-TTTGCTTTA-TATTACT-
1 TTGCTTTGCTTTACT-TTA-TA
* *
31974 TTGCTTTACTTTGCTTTATA
1 TTGCTTTGCTTTACTTTATA
* * *
31994 TTGCTTT-ATATTTCTTTGCT-
1 TTGCTTTGCT-TTACTTT-ATA
*
32014 TTGCTTT-ATATTACTTTATA
1 TTGCTTTGCT-TTACTTTATA
* *
32034 TTGCTTTGCTTTGCCTTATA
1 TTGCTTTGCTTTACTTTATA
* *
32054 TTACTTTG-TTGTGCTTTATA
1 TTGCTTTGCTT-TACTTTATA
*
32074 TTGCTTTGCTTTTCTTTATA
1 TTGCTTTGCTTTACTTTATA
*
32094 TTGC-TT--TATA--TTACT-
1 TTGCTTTGCTTTACTTTA-TA
* *
32109 TTGCTTTGCCTTA-TATCACT-
1 TTGCTTTGCTTTACT-TTA-TA
* *
32129 TTGCTTTGCTTTGCTGTATA
1 TTGCTTTGCTTTACTTTATA
* *
32149 TTGC-TT--TATA-TTTCT-
1 TTGCTTTGCTTTACTTTATA
*
32164 TTTCTTTGCTTTACTTTATA
1 TTGCTTTGCTTTACTTTATA
* *
32184 TTGCTTT-ATATTACTTTGCT-
1 TTGCTTTGCT-TTACTTT-ATA
*
32204 TTGCTTTG-TTTGCTTTATATTA
1 TTGCTTTGCTTTAC-TT-TA-TA
**
32226 CTTTGCTTTGCTTTGTTTTATA
1 --TTGCTTTGCTTTACTTTATA
* * *
32248 TTTCATTGCTTTGCTTTATA
1 TTGCTTTGCTTTACTTTATA
* *
32268 TTACTTTGCTTTGC----T-
1 TTGCTTTGCTTTACTTTATA
32283 TTG-TTTGCTTTA-TATTACT-
1 TTGCTTTGCTTTACT-TTA-TA
* * *
32302 TTGCTTCGCATTGCTTTATA
1 TTGCTTTGCTTTACTTTATA
*
32322 TTGCTTTGCTTTACCTTATA
1 TTGCTTTGCTTTACTTTATA
*
32342 TTACTTTGCTTTA-TATTACT-
1 TTGCTTTGCTTTACT-TTA-TA
*
32362 TTGCTTTG-TTGTGCTTTATA
1 TTGCTTTGCTT-TACTTTATA
* *
32382 TTGCTTTGCTTTGCTTAATA
1 TTGCTTTGCTTTACTTTATA
*
32402 TTGC-TT--TATA--TTACT-
1 TTGCTTTGCTTTACTTTA-TA
*
32417 TTGCTTTGCCTTA-TATTACT-
1 TTGCTTTGCTTTACT-TTA-TA
* *
32437 TTGCTTTGATTTGCTTTATA
1 TTGCTTTGCTTTACTTTATA
* * *
32457 TTG-ATT--TATA-TTTCT-
1 TTGCTTTGCTTTACTTTATA
*
32472 TAGCTTTGCTTTACTTTATA
1 TTGCTTTGCTTTACTTTATA
* * *
32492 TTACTTTGCTTTGCTTTGT-
1 TTGCTTTGCTTTACTTTATA
* * * *
32511 TTGCTAT-ATATTAATTTGCT-
1 TTGCTTTGCT-TTACTTT-ATA
*
32531 TTGCTTTGCTTTGCTTTATA
1 TTGCTTTGCTTTACTTTATA
* *
32551 TTGCTTT-ATATTGCTTTATA
1 TTGCTTTGCT-TTACTTTATA
* * *
32571 TTACTTTGCTTTGCCTTATA
1 TTGCTTTGCTTTACTTTATA
* * *
32591 TTACTTTTCTTTACTTTGCT-
1 TTGCTTTGCTTTACTTT-ATA
32611 TTGCTTTATTTTGCTTTACTTTATA
1 TTGC-----TTTGCTTTACTTTATA
* * * *
32636 TTGATTT-ATATTATTTTGCT-
1 TTGCTTTGCT-TTACTTT-ATA
*
32656 TTGCTTTG-TTTGCTTTATA
1 TTGCTTTGCTTTACTTTATA
* *
32675 TTACTTTGCTTTGC----T-
1 TTGCTTTGCTTTACTTTATA
* * *
32690 TTGCTTTGTTTTATATTTCT-
1 TTGCTTTGCTTTA-CTTTATA
** *
32710 TTGCTTTGCTTTGGTTTGCT-
1 TTGCTTTGCTTTACTTT-ATA
*
32730 TTGCTTTGCTTTATATTGTATTATA
1 TTGCTTTGC-TT-TA--CT-TTATA
*
32755 TTTCTTTGCTTTACTTTAT-
1 TTGCTTTGCTTTACTTTATA
* * *
32774 TTGCTTT-ATATTGCTTTGCT-
1 TTGCTTTGCT-TTACTTT-ATA
*
32794 TTGCTTTGCTTTATATTGTTTATA
1 TTGCTTTGC-TT-TA--CTTTATA
*
32818 TTACTTTGCTTTACTTTATATTA
1 TTGCTTTGCTTTAC-TT-TA-TA
* *
32841 CTTTGTTTTGCTTCACTTTATA
1 --TTGCTTTGCTTTACTTTATA
* *
32863 TTACTTTGCTTTGCTTTATA
1 TTGCTTTGCTTTACTTTATA
** *
32883 TTG-TTTTATATTACTTTGCT-
1 TTGCTTTGCT-TTACTTT-ATA
* *
32903 TTGCTTT-ATATAGCTTTATACTA
1 TTGCTTTGCTTTA-C-TT-TA-TA
* *
32926 TTACTTTGCTTTGCTTTATA
1 TTGCTTTGCTTTACTTTATA
* *
32946 TTACTTTGCTTTGCTTTATA
1 TTGCTTTGCTTTACTTTATA
32966 T
1 T
32967 ATTGCTTTAT
Statistics
Matches: 826, Mismatches: 162, Indels: 258
0.66 0.13 0.21
Matches are distributed among these distances:
14 12 0.01
15 45 0.05
16 30 0.04
17 15 0.02
18 18 0.02
19 98 0.12
20 471 0.57
21 33 0.04
22 15 0.02
23 18 0.02
24 31 0.04
25 40 0.05
ACGTcount: A:0.14, C:0.14, G:0.11, T:0.61
Consensus pattern (20 bp):
TTGCTTTGCTTTACTTTATA
Found at i:32276 original size:45 final size:45
Alignment explanation
Indices: 32212--32443 Score: 190
Period size: 45 Copynumber: 5.2 Consensus size: 45
32202 CTTTGCTTTG
* *
32212 TTTGCTTTATATTACTTTGCTTTGCTTTGTTTTATATT-TCATTGC
1 TTTGCTTTATATTACTTTGCTTTGCTTTGCTTTATATTAT-ATTAC
*
32257 TTTGCTTTATATTACTTTGCTTTGCTTTG-TTTGCT-TTATATTAC
1 TTTGCTTTATATTACTTTGCTTTGCTTTGCTTT-ATATTATATTAC
*** * * **
32301 TTTGCTTCGCATTGCTTT-ATATTGCTTTGCTTTACCTTATATTAC
1 TTTGCTTTATATTACTTTGCT-TTGCTTTGCTTTATATTATATTAC
* *
32346 TTTGCTTTATATTACTTTGCTTTG-TTGTGCTTTATATTGCT-TTGC
1 TTTGCTTTATATTACTTTGCTTTGCTT-TGCTTTATATT-ATATTAC
* * * * ***
32391 TTTGCTTAATATTGCTTT-ATATTACTTTGCTTTGCCTTATATTAC
1 TTTGCTTTATATTACTTTGCT-TTGCTTTGCTTTATATTATATTAC
32436 TTTGCTTT
1 TTTGCTTT
32444 GATTTGCTTT
Statistics
Matches: 148, Mismatches: 28, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 35 0.24
45 108 0.73
46 4 0.03
ACGTcount: A:0.14, C:0.15, G:0.12, T:0.59
Consensus pattern (45 bp):
TTTGCTTTATATTACTTTGCTTTGCTTTGCTTTATATTATATTAC
Found at i:32875 original size:30 final size:30
Alignment explanation
Indices: 32828--32952 Score: 136
Period size: 30 Copynumber: 4.2 Consensus size: 30
32818 TTACTTTGCT
*
32828 TTACTTTATATTACTTTGTTTTGC----T-
1 TTACTTTATATTACTTTGCTTTGCTTTATA
*
32853 TCACTTTATATTACTTTGCTTTGCTTTATA
1 TTACTTTATATTACTTTGCTTTGCTTTATA
**
32883 TTGTTTTATATTACTTTGCTTTGCTTTATA
1 TTACTTTATATTACTTTGCTTTGCTTTATA
32913 -TAGCTTTATACTATTACTTTGCTTTGCTTTATA
1 TTA-C-TT-TA-TATTACTTTGCTTTGCTTTATA
32946 TTACTTT
1 TTACTTT
32953 GCTTTGCTTT
Statistics
Matches: 83, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
25 22 0.27
29 2 0.02
30 27 0.33
31 3 0.04
32 4 0.05
33 23 0.28
34 2 0.02
ACGTcount: A:0.18, C:0.14, G:0.08, T:0.60
Consensus pattern (30 bp):
TTACTTTATATTACTTTGCTTTGCTTTATA
Found at i:32986 original size:26 final size:23
Alignment explanation
Indices: 32930--33003 Score: 84
Period size: 26 Copynumber: 3.2 Consensus size: 23
32920 ATACTATTAC
32930 TTTGCTTTGCTTTATA----TTA
1 TTTGCTTTGCTTTATATTTTTTA
32949 CTTTGCTTTGCTTTATATATTGCTTTA
1 -TTTGCTTTGCTTTATAT-TT--TTTA
32976 TTTGCTTTGCTTTATATTTTTTA
1 TTTGCTTTGCTTTATATTTTTTA
32999 TTTGC
1 TTTGC
33004 ATCTAGTGAG
Statistics
Matches: 47, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
20 16 0.34
23 9 0.19
25 2 0.04
26 17 0.36
27 3 0.06
ACGTcount: A:0.14, C:0.12, G:0.11, T:0.64
Consensus pattern (23 bp):
TTTGCTTTGCTTTATATTTTTTA
Found at i:34871 original size:27 final size:27
Alignment explanation
Indices: 34841--34902 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
34831 AAAGAAGAGA
*
34841 AATATAAAAAGCAAAGAAAATCAAAGC
1 AATATAAAAAGCAAAGAAAATAAAAGC
* *
34868 AATATAAAAATCAAAGCAAATAAAAGC
1 AATATAAAAAGCAAAGAAAATAAAAGC
34895 AATATAAA
1 AATATAAA
34903 GCAAAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.68, C:0.10, G:0.08, T:0.15
Consensus pattern (27 bp):
AATATAAAAAGCAAAGAAAATAAAAGC
Found at i:34877 original size:17 final size:16
Alignment explanation
Indices: 34848--34892 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
34838 AGAAATATAA
*
34848 AAAGCAAA-GAAAATC
1 AAAGCAAATAAAAATC
34863 AAAGCAATATAAAAATC
1 AAAGCAA-ATAAAAATC
34880 AAAGCAAATAAAA
1 AAAGCAAATAAAA
34893 GCAATATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 7 0.26
16 7 0.26
17 13 0.48
ACGTcount: A:0.69, C:0.11, G:0.09, T:0.11
Consensus pattern (16 bp):
AAAGCAAATAAAAATC
Found at i:34966 original size:5 final size:5
Alignment explanation
Indices: 34956--35078 Score: 79
Period size: 5 Copynumber: 24.0 Consensus size: 5
34946 AAATATAAAG
* * **
34956 AGCAA AGCAA AGCAA AACAA AGTAA AGCACA A-CAA AGCAAA ATAAAA
1 AGCAA AGCAA AGCAA AGCAA AGCAA AGCA-A AGCAA AGC-AA A-GCAA
** * * * *
35003 AGCAA AGCAA AGCAAA ATAAA AGGAA AGCAA AGCAA AGAAA AACAA AGCGA
1 AGCAA AGCAA AGC-AA AGCAA AGCAA AGCAA AGCAA AGCAA AGCAA AGCAA
* *
35054 AGCACA A-CAA AGCGA AGCGA AGCAA
1 AGCA-A AGCAA AGCAA AGCAA AGCAA
35079 CATAAAAAGT
Statistics
Matches: 90, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
4 4 0.04
5 73 0.81
6 13 0.14
ACGTcount: A:0.63, C:0.17, G:0.18, T:0.02
Consensus pattern (5 bp):
AGCAA
Found at i:34982 original size:15 final size:15
Alignment explanation
Indices: 34958--35071 Score: 90
Period size: 15 Copynumber: 7.7 Consensus size: 15
34948 ATATAAAGAG
34958 CAAAGCAAAGCAAAA
1 CAAAGCAAAGCAAAA
* *
34973 CAAAGTAAAGCACAA
1 CAAAGCAAAGCAAAA
*
34988 CAAAGCAAA--ATAA
1 CAAAGCAAAGCAAAA
*
35001 -AAAGCAAAGCAAAG
1 CAAAGCAAAGCAAAA
** * *
35015 CAAAATAAAAGGAAAG
1 C-AAAGCAAAGCAAAA
*
35031 CAAAGCAAAGAAAAA
1 CAAAGCAAAGCAAAA
* *
35046 CAAAGCGAAGCACAA
1 CAAAGCAAAGCAAAA
*
35061 CAAAGCGAAGC
1 CAAAGCAAAGC
35072 GAAGCAACAT
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
12 8 0.10
13 3 0.04
14 2 0.03
15 54 0.68
16 12 0.15
ACGTcount: A:0.63, C:0.18, G:0.17, T:0.03
Consensus pattern (15 bp):
CAAAGCAAAGCAAAA
Found at i:35013 original size:47 final size:47
Alignment explanation
Indices: 34950--35057 Score: 132
Period size: 47 Copynumber: 2.3 Consensus size: 47
34940 GCACATAAAT
* * *
34950 ATAAAGAGCAAAGCAAAGCAAAA-CAAAGTAAAGCACAA-CAAAGCAAA
1 ATAAAAAGCAAAGCAAAGCAAAATAAAAGGAAAGCA-AAGCAAAG-AAA
34997 ATAAAAAGCAAAGCAAAGCAAAATAAAAGGAAAGCAAAGCAAAGAAA
1 ATAAAAAGCAAAGCAAAGCAAAATAAAAGGAAAGCAAAGCAAAGAAA
* *
35044 A-ACAAAGCGAAGCA
1 ATAAAAAGCAAAGCA
35058 CAACAAAGCG
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
46 11 0.20
47 28 0.52
48 15 0.28
ACGTcount: A:0.65, C:0.15, G:0.17, T:0.04
Consensus pattern (47 bp):
ATAAAAAGCAAAGCAAAGCAAAATAAAAGGAAAGCAAAGCAAAGAAA
Found at i:35030 original size:21 final size:22
Alignment explanation
Indices: 34950--35095 Score: 115
Period size: 22 Copynumber: 6.7 Consensus size: 22
34940 GCACATAAAT
*
34950 ATAAAGAGCAAAGCAAAGCAAA
1 ATAAAAAGCAAAGCAAAGCAAA
*
34972 ACAAAGTAAAGCACAA-CAAAGCAAA
1 A-TAA--AAAGCA-AAGCAAAGCAAA
34997 ATAAAAAGCAAAGCAAAGCAAA
1 ATAAAAAGCAAAGCAAAGCAAA
*
35019 AT-AAAAGGAAAGCAAAGC-AA
1 ATAAAAAGCAAAGCAAAGCAAA
* * *
35039 AGAAAAA-CAAAGCGAAGC-AC
1 ATAAAAAGCAAAGCAAAGCAAA
* * * *
35059 A-ACAAAGCGAAGCGAAGCAAC
1 ATAAAAAGCAAAGCAAAGCAAA
*
35080 ATAAAAAGTAAAGCAA
1 ATAAAAAGCAAAGCAA
35096 TATGTTGACA
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
19 4 0.04
20 24 0.24
21 24 0.24
22 28 0.28
23 2 0.02
24 2 0.02
25 15 0.15
26 2 0.02
ACGTcount: A:0.63, C:0.16, G:0.17, T:0.04
Consensus pattern (22 bp):
ATAAAAAGCAAAGCAAAGCAAA
Found at i:36188 original size:15 final size:15
Alignment explanation
Indices: 36168--36196 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36158 AGTAATATTG
36168 CTTTATATTACTTTT
1 CTTTATATTACTTTT
36183 CTTTATATTACTTT
1 CTTTATATTACTTT
36197 ATATTTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.66
Consensus pattern (15 bp):
CTTTATATTACTTTT
Found at i:36196 original size:25 final size:25
Alignment explanation
Indices: 36162--36211 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
36152 TAATTTAGTA
* *
36162 ATATTGCTTTATATTACTTTTCTTT
1 ATATTACTTTATATTACTTTGCTTT
*
36187 ATATTACTTTATATTTCTTTGCTTT
1 ATATTACTTTATATTACTTTGCTTT
36212 GCTGTATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (25 bp):
ATATTACTTTATATTACTTTGCTTT
Found at i:36408 original size:24 final size:25
Alignment explanation
Indices: 36345--36401 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
36335 TGATAGGTGG
*
36345 ATTTAATT-TTTTTAATGATTATTTGT
1 ATTTAATTATATTT-AT-ATTATTTGT
36371 ATTTAATTATATTTATATTA-TTGT
1 ATTTAATTATATTTATATTATTTGT
*
36395 TTTTAAT
1 ATTTAAT
36402 ATTATTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 10 0.36
25 4 0.14
26 10 0.36
27 4 0.14
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (25 bp):
ATTTAATTATATTTATATTATTTGT
Found at i:37787 original size:17 final size:16
Alignment explanation
Indices: 37748--37789 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
37738 TAAATTTTTA
37748 TCATTTTTACAAAATT
1 TCATTTTTACAAAATT
37764 TCATTTTTACAAAATT
1 TCATTTTTACAAAATT
*
37780 TCACTTTTAC
1 TCATTTTTAC
37790 TAATTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (16 bp):
TCATTTTTACAAAATT
Found at i:38736 original size:25 final size:25
Alignment explanation
Indices: 38703--38751 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
38693 ATCTATTGCT
*
38703 CTTTGCTTTGCTTTGCTTTATATTA
1 CTTTACTTTGCTTTGCTTTATATTA
38728 CTTTACTTTGCTTTGCTTTATATT
1 CTTTACTTTGCTTTGCTTTATATT
38752 GCGTTGCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.12, C:0.16, G:0.10, T:0.61
Consensus pattern (25 bp):
CTTTACTTTGCTTTGCTTTATATTA
Found at i:39340 original size:25 final size:25
Alignment explanation
Indices: 39318--39366 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
39308 GCTCTTTGAT
39318 TTGCTTTGCTTTATATTACTTTGCA
1 TTGCTTTGCTTTATATTACTTTGCA
* *
39343 TTGTTTTGCTTTATGTTACTTTGC
1 TTGCTTTGCTTTATATTACTTTGC
39367 TTTATATTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.14, G:0.14, T:0.59
Consensus pattern (25 bp):
TTGCTTTGCTTTATATTACTTTGCA
Found at i:39376 original size:25 final size:25
Alignment explanation
Indices: 39323--39380 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
39313 TTGATTTGCT
* *
39323 TTGCTTTATATTACTTTGCATTGTT
1 TTGCTTTATATTACTTTGCATTATA
* *
39348 TTGCTTTATGTTACTTTGCTTTATA
1 TTGCTTTATATTACTTTGCATTATA
39373 TTGCTTTA
1 TTGCTTTA
39381 ATTCATCGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.16, C:0.12, G:0.12, T:0.60
Consensus pattern (25 bp):
TTGCTTTATATTACTTTGCATTATA
Found at i:39422 original size:608 final size:604
Alignment explanation
Indices: 38243--39368 Score: 1813
Period size: 608 Copynumber: 1.9 Consensus size: 604
38233 TACCTACAAG
*
38243 AGAGCAAGTCACAGTGGCAAATTTTGGGACGAAGTTTTGGGGCCTAAAAAAATTTTCAAAGGAGG
1 AGAGCAACTCACAGTGGCAAATTTTGGGACGAAGTTTTGGGGCCTAAAAAAATTTTCAAAGGAGG
38308 AAGATAGTGCCAATTTTCACATTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTATTAG
66 AAGATAGTGCCAATTTTCACATTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTATTAG
*
38373 CTCTAGCCTACTTTTCATATATCAGCATTGAAGTTGAAATTTTGAATGTAATTGAAGTAAAAACT
131 CTCTAGCCTACTTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGTAATTGAAGTAAAAACT
*
38438 GGAAATTTTCAATTGAAAAGAACTTTTCAAATTTCATTACTCGTCTCATAATTTTAATTTCCACT
196 GGAAATTTTCAATTGAAAAGAACTTCTCAAATTTCATTACTCGTCTCATAATTTTAATTTCCACT
* * *
38503 AAAATTTAACTACAAAATTTAATAATTACCATGAAAATAAAAACATAGACTCCAATAACTTATGG
261 AAAATTTAACTACAAAAATTAATAATTACCATGAAAATAAAAACATAAACTCCAATAACTAATGG
* * * *
38568 TATCCAAAAGACCTAATCATTGCCAAATCCTACAGCTTTGGTAACTTTTAAGTTTATGTTTTCTC
326 TATCCAAAAGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTACGTTTTCTC
*
38633 TATCTTTTCCCCTCAAATTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTA
391 TACCTTTTCCCCTCAAATTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTA
* * *
38698 TTGCTCTTTGCTTTGCTTTGCTTTATATTACTTTACTTTGCTTTGCTTTATATTGCGTTGCTTCA
456 TTGCTCTTTGATTTGCTTTGCTTTATATTACTTTACATTGCTTTGCTTTATATTACGTTGCTTCA
* * ** *
38763 TCGTTGTAAAGATACATACATACATCTGCAAACAAAATCTACAACAACAAAAGTTGCTTCTCAAA
521 TCATTGTAAAGATACATACATAAAGATACAAACAAAATCTACAACAACAAAAGTTGCTTCTCAAA
38828 GACCGCTGTTGCTCTATTA
586 GACCGCTGTTGCTCTATTA
* * * *
38847 AGAGCAACTCGCAGTGGCAGATTTT-GGATGAAGTTTTGGGGCCTAATAAAATTTTCAAAGGAGG
1 AGAGCAACTCACAGTGGCAAATTTTGGGACGAAGTTTTGGGGCCTAAAAAAATTTTCAAAGGAGG
* * * *
38911 AATATAGTGCTAATTTTTCACGTTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTATTG
66 AAGATAGTGCCAA-TTTTCACATTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTATTA
* *
38976 GCTCTAGCTTACTTTTCATATATCATCATTGAAGTGGAAATTTTGAATGGTTAGAATTGAAGTAA
130 GCTCTAGCCTACTTTTCATATATCAGCATTGAAGTGGAAATTTTGAAT-G-T--AATTGAAGTAA
*
39041 AAACTGGAAATTTTCAATTGAAAAGAACTTCTCAAATTTCATTACTCGTCTCATAATTTTGATTT
191 AAACTGGAAATTTTCAATTGAAAAGAACTTCTCAAATTTCATTACTCGTCTCATAATTTTAATTT
* * *
39106 CCACTAAAATTTAATTGCAAAAATTAATAATTCCCATGAAAATAAAAACATAAACTCCAATAACT
256 CCACTAAAATTTAACTACAAAAATTAATAATTACCATGAAAATAAAAACATAAACTCCAATAACT
* * * *
39171 AATGGTATGCGAAGGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTCCGTT
321 AATGGTATCCAAAAGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTACGTT
* *
39236 TTCTCTACCTTTTCCCCTTAATTTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTC
386 TTCTCTACCTTTTCCCCTCAAATTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTC
* * * *
39301 ATCTATTGCTCTTTGATTTGCTTTGCTTTATATTACTTTGCATTGTTTTGCTTTATGTTACTTTG
451 ATCTATTGCTCTTTGATTTGCTTTGCTTTATATTACTTTACATTGCTTTGCTTTATATTACGTTG
39366 CTT
516 CTT
39369 TATATTGCTT
Statistics
Matches: 479, Mismatches: 38, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
603 48 0.10
604 116 0.24
605 1 0.00
606 1 0.00
608 313 0.65
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.38
Consensus pattern (604 bp):
AGAGCAACTCACAGTGGCAAATTTTGGGACGAAGTTTTGGGGCCTAAAAAAATTTTCAAAGGAGG
AAGATAGTGCCAATTTTCACATTAATATGCTTCTAACTCACTAGTCTTGCTCTATCATGTATTAG
CTCTAGCCTACTTTTCATATATCAGCATTGAAGTGGAAATTTTGAATGTAATTGAAGTAAAAACT
GGAAATTTTCAATTGAAAAGAACTTCTCAAATTTCATTACTCGTCTCATAATTTTAATTTCCACT
AAAATTTAACTACAAAAATTAATAATTACCATGAAAATAAAAACATAAACTCCAATAACTAATGG
TATCCAAAAGACCTAATCATTGCCAAATCCTACAACTTTGGTAACTCTTAAGCTTACGTTTTCTC
TACCTTTTCCCCTCAAATTTTCTCATAAAAATCTCTCTCTATTATTTAAACATATTGGTCATCTA
TTGCTCTTTGATTTGCTTTGCTTTATATTACTTTACATTGCTTTGCTTTATATTACGTTGCTTCA
TCATTGTAAAGATACATACATAAAGATACAAACAAAATCTACAACAACAAAAGTTGCTTCTCAAA
GACCGCTGTTGCTCTATTA
Found at i:41464 original size:23 final size:23
Alignment explanation
Indices: 41390--41554 Score: 114
Period size: 23 Copynumber: 7.4 Consensus size: 23
41380 TAAACGGAAC
* * *
41390 AAACAGAGAGTAC-CGAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
* *
41412 AAATAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
41434 AGGCAACAGAGAGCACACAAAGTGCT
1 A---AACAGAGAGCACACAAAGTGCT
*
41460 AAACAGAGAGTACACAAA--G-T
1 AAACAGAGAGCACACAAAGTGCT
* *
41480 --AC--TGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
** *
41499 AATTAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
41522 AATCAGAGAGCACACACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
41545 AATCAGAGAG
1 AAACAGAGAG
41555 TGCGCTAGTG
Statistics
Matches: 117, Mismatches: 14, Indels: 23
0.76 0.09 0.15
Matches are distributed among these distances:
16 9 0.08
18 3 0.03
19 1 0.01
20 1 0.01
21 1 0.01
22 18 0.15
23 64 0.55
25 12 0.10
26 8 0.07
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.13
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Done.