Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005856.1 Kokia drynarioides strain JFW-HI SEQ_120172, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6438
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29


Found at i:1609 original size:31 final size:31

Alignment explanation


    Indices: 1571--1636  Score: 132
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       1561 GAGTCACAGG

                                           
       1571 AGAAAGAAGTTTAATTGGAGATACTTGAGAA
          1 AGAAAGAAGTTTAATTGGAGATACTTGAGAA

                                           
       1602 AGAAAGAAGTTTAATTGGAGATACTTGAGAA
          1 AGAAAGAAGTTTAATTGGAGATACTTGAGAA

                
       1633 AGAA
          1 AGAA

       1637 GCACCTCGGA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   35  1.00

ACGTcount: A:0.47, C:0.03, G:0.26, T:0.24


Consensus pattern (31 bp):   
AGAAAGAAGTTTAATTGGAGATACTTGAGAA
Done.