Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005857.1 Kokia drynarioides strain JFW-HI SEQ_120175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 835

Length: 1393
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35


Found at i:1346 original size:23 final size:23

Alignment explanation


    Indices: 1318--1362  Score: 72
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1308 AGATAGATGA

                                   
       1318 ATGGTTTTATTGAGATACAATGG
          1 ATGGTTTTATTGAGATACAATGG

                    *  *          
       1341 ATGGTTTTTTTTAGATACAATG
          1 ATGGTTTTATTGAGATACAATG

       1363 TATAATTTGA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.29, C:0.04, G:0.22, T:0.44


Consensus pattern (23 bp):   
ATGGTTTTATTGAGATACAATGG
Done.