Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005860.1 Kokia drynarioides strain JFW-HI SEQ_120179, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2247
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32


Found at i:454 original size:66 final size:66

Alignment explanation


    Indices: 378--509  Score: 255
    Period size: 66  Copynumber: 2.0  Consensus size: 66

        368 GTGTAATGGT

                                                                             
        378 GGTTGGTGGTGGAGTGGCAACGGGAGAGGGGGTGGAGCTTGAAGTCGGTGACATGGTGGGTGATG
          1 GGTTGGTGGTGGAGTGGCAACGGGAGAGGGGGTGGAGCTTGAAGTCGGTGACATGGTGGGTGATG

             
        443 C
         66 C

                                               *                             
        444 GGTTGGTGGTGGAGTGGCAACGGGAGAGGGGGTGGCGCTTGAAGTCGGTGACATGGTGGGTGATG
          1 GGTTGGTGGTGGAGTGGCAACGGGAGAGGGGGTGGAGCTTGAAGTCGGTGACATGGTGGGTGATG

             
        509 C
         66 C

        510 CGATGGACTT


Statistics
Matches: 65,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  66   65  1.00

ACGTcount: A:0.16, C:0.10, G:0.53, T:0.21


Consensus pattern (66 bp):   
GGTTGGTGGTGGAGTGGCAACGGGAGAGGGGGTGGAGCTTGAAGTCGGTGACATGGTGGGTGATG
C
Done.