Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005865.1 Kokia drynarioides strain JFW-HI SEQ_120186, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52199
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Found at i:2040 original size:5 final size:6
Alignment explanation
Indices: 2026--2055 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
2016 TTTTAGACAC
2026 AAAATA AAAATA AAAATA AAAATA ATAAAT
1 AAAATA AAAATA AAAATA AAAATA A-AAAT
2056 TTTTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:9527 original size:21 final size:22
Alignment explanation
Indices: 9503--9549 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
9493 TGATCTAAGA
9503 AAAAACAAAAG-AAACAGAATT
1 AAAAACAAAAGAAAACAGAATT
* *
9524 AAAAATAAAAGAAAATAGAATT
1 AAAAACAAAAGAAAACAGAATT
9546 AAAA
1 AAAA
9550 GAAATAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.74, C:0.04, G:0.09, T:0.13
Consensus pattern (22 bp):
AAAAACAAAAGAAAACAGAATT
Found at i:9543 original size:22 final size:21
Alignment explanation
Indices: 9503--9562 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
9493 TGATCTAAGA
*
9503 AAAAACAAAAG-AAACAGAATT
1 AAAAA-AAAAGAAAATAGAATT
9524 AAAAATAAAAGAAAATAGAATT
1 AAAAA-AAAAGAAAATAGAATT
*
9546 AAAAGAAATAGAAAATA
1 AAAA-AAAAAGAAAATA
9563 AGGAAGTCGA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.29
22 23 0.68
23 1 0.03
ACGTcount: A:0.73, C:0.03, G:0.10, T:0.13
Consensus pattern (21 bp):
AAAAAAAAAGAAAATAGAATT
Found at i:9554 original size:15 final size:16
Alignment explanation
Indices: 9529--9558 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9519 GAATTAAAAA
9529 TAAAAGAAAATAGAAT
1 TAAAAGAAAATAGAAT
9545 TAAAAG-AAATAGAA
1 TAAAAGAAAATAGAA
9559 AATAAGGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (16 bp):
TAAAAGAAAATAGAAT
Found at i:10362 original size:30 final size:29
Alignment explanation
Indices: 10326--10402 Score: 86
Period size: 30 Copynumber: 2.7 Consensus size: 29
10316 AAATAAACAT
*
10326 AAATTAAATACAAATAAATAATGTA-TTTA
1 AAATTAAATACAAATAAA-AATATATTTTA
* *
10355 AATATTAAATCCTAATAAAAATATATTTTA
1 AA-ATTAAATACAAATAAAAATATATTTTA
*
10385 AAATAAAATA-AAATAAAA
1 AAATTAAATACAAATAAAA
10403 CCAGGTCTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.17
29 13 0.32
30 20 0.50
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (29 bp):
AAATTAAATACAAATAAAAATATATTTTA
Found at i:11117 original size:20 final size:20
Alignment explanation
Indices: 11094--11131 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
11084 TCATTTGTAA
11094 AAAAAATATTTCAAAAATGT
1 AAAAAATATTTCAAAAATGT
11114 AAAAAATATTTCAAAAAT
1 AAAAAATATTTCAAAAAT
11132 ATAATGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (20 bp):
AAAAAATATTTCAAAAATGT
Found at i:11198 original size:35 final size:31
Alignment explanation
Indices: 11155--11254 Score: 121
Period size: 35 Copynumber: 3.1 Consensus size: 31
11145 TTTGTAAAAG
11155 AAATATTTCGGAAATATAAAAAATATATGTAAA
1 AAATATTTC-GAAATATAAAAAAT-TATGTAAA
*
11188 AACTTCATTTCGAAGATATAAAAAATGTATGTAAA
1 AA-AT-ATTTCGAA-ATATAAAAAAT-TATGTAAA
*
11223 AAATATTTCGAAA-ATAAAAAATTATTTAAA
1 AAATATTTCGAAATATAAAAAATTATGTAAA
11253 AA
1 AA
11255 TTCGGAAATA
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
30 9 0.15
31 9 0.15
32 1 0.02
33 10 0.17
34 5 0.08
35 26 0.43
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (31 bp):
AAATATTTCGAAATATAAAAAATTATGTAAA
Found at i:12738 original size:6 final size:6
Alignment explanation
Indices: 12727--12772 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
12717 TTTATTATTT
** *
12727 ATTTCA ATTTCA ATTTC- ATTTTG ATTTC- ATTTCA ACTTCA ATTTCA
1 ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA
12773 TTTAAAATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
5 9 0.26
6 25 0.74
ACGTcount: A:0.28, C:0.17, G:0.02, T:0.52
Consensus pattern (6 bp):
ATTTCA
Found at i:12747 original size:17 final size:16
Alignment explanation
Indices: 12723--12775 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
12713 TTTATTTATT
12723 ATTT-ATTTCAATTTC
1 ATTTCATTTCAATTTC
**
12738 AATTTCATTTTGATTTC
1 -ATTTCATTTCAATTTC
*
12755 ATTTCAACTTCAATTTC
1 ATTTC-ATTTCAATTTC
12772 ATTT
1 ATTT
12776 AAAATTAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 9 0.30
17 21 0.70
ACGTcount: A:0.26, C:0.15, G:0.02, T:0.57
Consensus pattern (16 bp):
ATTTCATTTCAATTTC
Found at i:12759 original size:28 final size:27
Alignment explanation
Indices: 12723--12775 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
12713 TTTATTTATT
*
12723 ATTTATTTCAATTTCAATTTCATTTTG
1 ATTTATTTCAACTTCAATTTCATTTTG
12750 ATTTCATTTCAACTTCAATTTCATTT
1 ATTT-ATTTCAACTTCAATTTCATTT
12776 AAAATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.26, C:0.15, G:0.02, T:0.57
Consensus pattern (27 bp):
ATTTATTTCAACTTCAATTTCATTTTG
Found at i:12786 original size:17 final size:17
Alignment explanation
Indices: 12750--12806 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
12740 TTTCATTTTG
* * *
12750 ATTTCATTTCAACTTCA
1 ATTTCATTTAAAATTAA
12767 ATTTCATTTAAAATTAA
1 ATTTCATTTAAAATTAA
12784 ATTGT-ATTTATAAACTTAA
1 ATT-TCATTTA-AAA-TTAA
12803 ATTT
1 ATTT
12807 TTTACTTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 22 0.65
18 5 0.15
19 7 0.21
ACGTcount: A:0.39, C:0.11, G:0.02, T:0.49
Consensus pattern (17 bp):
ATTTCATTTAAAATTAA
Found at i:12917 original size:15 final size:16
Alignment explanation
Indices: 12893--12930 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
12883 ATTTTATTAC
*
12893 ACTTTTTTAG-TTTAA
1 ACTTTATTAGTTTTAA
12908 ACTTTATTAGTTTTAA
1 ACTTTATTAGTTTTAA
*
12924 AATTTAT
1 ACTTTAT
12931 ATTATTACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (16 bp):
ACTTTATTAGTTTTAA
Found at i:13056 original size:18 final size:17
Alignment explanation
Indices: 13032--13076 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
13022 TTAATTTCGA
13032 ATTTAATTTTCAA-TTC
1 ATTTAATTTTCAATTTC
13048 AACTTTAATTTT-AATTTC
1 -A-TTTAATTTTCAATTTC
13066 ATTTAATTTTC
1 ATTTAATTTTC
13077 TTTTCAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 9 0.36
17 4 0.16
18 12 0.48
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTTAATTTTCAATTTC
Found at i:13112 original size:12 final size:12
Alignment explanation
Indices: 13019--13113 Score: 59
Period size: 12 Copynumber: 7.6 Consensus size: 12
13009 AATTTTTATT
*
13019 AATTTAATTTCG
1 AATTTAATTTCA
13031 AATTTAATTTTC-
1 AATTTAA-TTTCA
*
13043 AATTCAACTTT-A
1 AATTTAA-TTTCA
*
13055 ATTTTAATTTCA
1 AATTTAATTTCA
**
13067 TTTAATTTTCTTTTCA
1 ---AA-TTTAATTTCA
*
13083 AATGTAATTTCA
1 AATTTAATTTCA
*
13095 ATTTTAATTTCA
1 AATTTAATTTCA
13107 AATTTAA
1 AATTTAA
13114 ACTATTATTT
Statistics
Matches: 63, Mismatches: 13, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
11 3 0.05
12 45 0.71
13 6 0.10
15 1 0.02
16 8 0.13
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (12 bp):
AATTTAATTTCA
Found at i:13123 original size:19 final size:19
Alignment explanation
Indices: 13101--13152 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
13091 TTCAATTTTA
*
13101 ATTTCAAATTT-AAACTATT
1 ATTT-AAATTTCAAACTAGT
*
13120 ATTTTAATTTCAAACTAGT
1 ATTTAAATTTCAAACTAGT
* *
13139 ATTTTATTTTCAAA
1 ATTTAAATTTCAAA
13153 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 5 0.17
19 24 0.83
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (19 bp):
ATTTAAATTTCAAACTAGT
Found at i:13166 original size:35 final size:35
Alignment explanation
Indices: 13123--13194 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
13113 AACTATTATT
*
13123 TTAATTTCAAACTAGTATTTTATTTTCAAATTCAA
1 TTAATTTCAAACTAGTATATTATTTTCAAATTCAA
13158 TTAATTTCAAACTAGTATATTATTTTCAAATTCAA
1 TTAATTTCAAACTAGTATATTATTTTCAAATTCAA
13193 TT
1 TT
13195 TAGACTAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.49
Consensus pattern (35 bp):
TTAATTTCAAACTAGTATATTATTTTCAAATTCAA
Found at i:13184 original size:19 final size:19
Alignment explanation
Indices: 13107--13187 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
13097 TTTAATTTCA
* *
13107 AATTT-AAACTATTATTTT
1 AATTTCAAACTAGTATATT
*
13125 AATTTCAAACTAGTATTTT
1 AATTTCAAACTAGTATATT
*
13144 ATTTTCAAA-T--TCA-ATT
1 AATTTCAAACTAGT-ATATT
13160 AATTTCAAACTAGTATATT
1 AATTTCAAACTAGTATATT
*
13179 ATTTTCAAA
1 AATTTCAAA
13188 TTCAATTTAG
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
16 11 0.21
17 2 0.04
18 7 0.13
19 32 0.62
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (19 bp):
AATTTCAAACTAGTATATT
Found at i:13228 original size:17 final size:17
Alignment explanation
Indices: 13206--13249 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
13196 AGACTAATAT
*
13206 TTTAATTTCATTTAAAC
1 TTTAATTTCATTCAAAC
*
13223 TTTAATTTCATTCCAAC
1 TTTAATTTCATTCAAAC
13240 TTTAATTTCA
1 TTTAATTTCA
13250 AACTCTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAATTTCATTCAAAC
Found at i:13307 original size:17 final size:18
Alignment explanation
Indices: 13287--13321 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
13277 AAACTATAAA
*
13287 TTAA-TTTAAATTCCATT
1 TTAATTTTAAACTCCATT
13304 TTAATTTTAAACTCCATT
1 TTAATTTTAAACTCCATT
13322 AATTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAATTTTAAACTCCATT
Found at i:13326 original size:22 final size:22
Alignment explanation
Indices: 13301--13354 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
13291 TTTAAATTCC
13301 ATTTTAATTTTAAACTCCATTA
1 ATTTTAATTTTAAACTCCATTA
* *
13323 ATTTTTATTTTAAACTCCGTTA
1 ATTTTAATTTTAAACTCCATTA
13345 ATTTTAATTT
1 ATTTTAATTT
13355 CGAATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.31, C:0.11, G:0.02, T:0.56
Consensus pattern (22 bp):
ATTTTAATTTTAAACTCCATTA
Found at i:16621 original size:18 final size:18
Alignment explanation
Indices: 16581--16623 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
16571 ATTTGTGATT
16581 ATTATTTTTTAATATATA
1 ATTATTTTTTAATATATA
* *
16599 TTTATTTTTTCGATA-ATA
1 ATTATTTTTT-AATATATA
16617 ATTATTT
1 ATTATTT
16624 CTTCACATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
ATTATTTTTTAATATATA
Found at i:17485 original size:59 final size:57
Alignment explanation
Indices: 17357--17522 Score: 181
Period size: 59 Copynumber: 2.9 Consensus size: 57
17347 ACAGAAAGTT
* * *
17357 GGTGTCGGTCATTGGTTGCCAAACACCAAAAAAATT-ATTTTTTAATTCATATTTTTTG
1 GGTGTTGGTCATTGCTTGACAAACACC-AAAAAATTAATTTTTT-ATTCATATTTTTTG
* * * ** *
17415 AGTGTTAGTCATTGCTTGTCAAACACCAAAAAATTAATTTTTTATTTGTTTTTTTAGTG
1 GGTGTTGGTCATTGCTTGACAAACACCAAAAAATTAATTTTTTATTCATATTTTT--TG
* * *
17474 GGTGTTGGTCATGGCTTGACAGACACCAAAAAAATAATTTTTTATTCAT
1 GGTGTTGGTCATTGCTTGACAAACACCAAAAAATTAATTTTTTATTCAT
17523 TTTAGGTGTC
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
57 17 0.19
58 29 0.33
59 43 0.48
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.42
Consensus pattern (57 bp):
GGTGTTGGTCATTGCTTGACAAACACCAAAAAATTAATTTTTTATTCATATTTTTTG
Found at i:17668 original size:60 final size:58
Alignment explanation
Indices: 17556--17688 Score: 140
Period size: 60 Copynumber: 2.2 Consensus size: 58
17546 CAAACACTCG
* * * **
17556 AAAAAATATTTTTGGGTATTTGGAAAAAGAGGTATCGGTCATGAATTAGCAGACATTTA
1 AAAAAATATTTTTTGGTATTTGGAAAAAGAGGTATCAGCCATGAATTAGCAGACA-CCA
* * * ** *
17615 AAAAATATATTTTTTTGTATTTGGAAAAGGAGGTGTCAGCCATGGTTTGGCAGACACCAA
1 AAAAA-ATATTTTTTGGTATTTGGAAAAAGAGGTATCAGCCATGAATTAGCAGACACC-A
17675 AAAAAATATTTTTT
1 AAAAAATATTTTTT
17689 ATTCGTATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
59 14 0.23
60 47 0.77
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (58 bp):
AAAAAATATTTTTTGGTATTTGGAAAAAGAGGTATCAGCCATGAATTAGCAGACACCA
Found at i:22203 original size:17 final size:18
Alignment explanation
Indices: 22183--22228 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
22173 TTAAAAAAAT
22183 ATTTATTTTATTTTA-AC
1 ATTTATTTTATTTTATAC
* *
22200 ATTTA-ATAATTTTATAC
1 ATTTATTTTATTTTATAC
22217 ATTT-TTTTATTT
1 ATTTATTTTATTT
22229 ATTGAAAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
16 7 0.30
17 16 0.70
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTATTTTATTTTATAC
Found at i:33143 original size:22 final size:23
Alignment explanation
Indices: 33113--33164 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 23
33103 ACACTAGCGC
*
33113 GCTTACTGTTTAGCACTGTGTGT
1 GCTTACTGTTCAGCACTGTGTGT
33136 GCTT-CTGTTCAGCACTGTGTGT
1 GCTTACTGTTCAGCACTGTGTGT
*
33158 GCCTACT
1 GCTTACT
33165 TTTTTCCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 20 0.77
23 6 0.23
ACGTcount: A:0.12, C:0.23, G:0.25, T:0.40
Consensus pattern (23 bp):
GCTTACTGTTCAGCACTGTGTGT
Found at i:37805 original size:22 final size:22
Alignment explanation
Indices: 37775--37830 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
37765 ACGCTAGCGC
* *
37775 GCTTACTGTTTAGCATTGTGTGT
1 GCTT-CTGTTTAGCACTATGTGT
*
37798 GCTTCTGTTCAGCACTATGTGT
1 GCTTCTGTTTAGCACTATGTGT
*
37820 GCCTACTGTTT
1 G-CTTCTGTTT
37831 TCCAGTACTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 16 0.59
23 11 0.41
ACGTcount: A:0.12, C:0.20, G:0.23, T:0.45
Consensus pattern (22 bp):
GCTTCTGTTTAGCACTATGTGT
Found at i:43684 original size:21 final size:20
Alignment explanation
Indices: 43644--43694 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
43634 TTGAAAAATC
43644 ATTTAA-TTAATAAATTAATT
1 ATTTAATTTAATAAA-TAATT
43664 AATTTAATTTAATAGAA-AATT
1 -ATTTAATTTAATA-AATAATT
*
43685 ATTTACTTTA
1 ATTTAATTTA
43695 GACAATAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 9 0.33
21 10 0.37
22 6 0.22
23 2 0.07
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (20 bp):
ATTTAATTTAATAAATAATT
Found at i:52182 original size:2 final size:2
Alignment explanation
Indices: 52175--52199 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
52165 CAAGTTCAGA
52175 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.