Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005869.1 Kokia drynarioides strain JFW-HI SEQ_120191, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 800

Length: 1334
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29


Found at i:68 original size:45 final size:45

Alignment explanation


    Indices: 1--131  Score: 183
    Period size: 45  Copynumber: 2.9  Consensus size: 45

                                                         
          1 CAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATACTCAAGC
          1 CAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATACTCAAGC

                             *                     *    *
         46 CAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATACCCAAGG
          1 CAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATACTCAAGC

            *               *              *   *      
         91 GAAGGATATCATG-CTGAGTTTGACGAGCCATCGCGATACTC
          1 CAAGGATATCA-GCCTCAGTTTGACGAGCCACCGCAATACTC

        132 TATTCCTCCG


Statistics
Matches: 76,  Mismatches: 9, Indels: 2
        0.87            0.10        0.02

Matches are distributed among these distances:
  45   75  0.99
  46    1  0.01

ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19


Consensus pattern (45 bp):   
CAAGGATATCAGCCTCAGTTTGACGAGCCACCGCAATACTCAAGC

Found at i:152 original size:21 final size:21

Alignment explanation


    Indices: 126--168  Score: 77
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        116 AGCCATCGCG

                    *            
        126 ATACTCTATTCCTCCGGGGCA
          1 ATACTCTACTCCTCCGGGGCA

                                 
        147 ATACTCTACTCCTCCGGGGCA
          1 ATACTCTACTCCTCCGGGGCA

             
        168 A
          1 A

        169 ATGGACCCTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.21, C:0.35, G:0.19, T:0.26


Consensus pattern (21 bp):   
ATACTCTACTCCTCCGGGGCA
Done.