Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000587.1 Kokia drynarioides strain JFW-HI SEQ_111517, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 994

Length: 1657
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40


Found at i:697 original size:10 final size:10

Alignment explanation


    Indices: 670--713  Score: 61
    Period size: 10  Copynumber: 4.1  Consensus size: 10

        660 AAAATTAGTA

                      
        670 TATTTATTTT
          1 TATTTATTTT

                        
        680 CATATTTATTTT
          1 --TATTTATTTT

                      
        692 TATTTATTTT
          1 TATTTATTTT

                       
        702 TATTTTATTTT
          1 TA-TTTATTTT

             
        713 T
          1 T

        714 TAAATTTTAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 3
        0.91            0.00        0.09

Matches are distributed among these distances:
  10   12  0.39
  11    9  0.29
  12   10  0.32

ACGTcount: A:0.20, C:0.02, G:0.00, T:0.77


Consensus pattern (10 bp):   
TATTTATTTT

Found at i:715 original size:22 final size:22

Alignment explanation


    Indices: 670--713  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        660 AAAATTAGTA

                                  
        670 TATTTATTTTCATATTTATTTT
          1 TATTTATTTTCATATTTATTTT

                      *           
        692 TATTTATTTTTAT-TTTATTTT
          1 TATTTATTTTCATATTTATTTT

             
        713 T
          1 T

        714 TAAATTTTAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  21    9  0.43
  22   12  0.57

ACGTcount: A:0.20, C:0.02, G:0.00, T:0.77


Consensus pattern (22 bp):   
TATTTATTTTCATATTTATTTT
Done.