Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005870.1 Kokia drynarioides strain JFW-HI SEQ_120192, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39


Found at i:483 original size:216 final size:216

Alignment explanation


    Indices: 1--1009  Score: 1138
    Period size: 216  Copynumber: 4.7  Consensus size: 216

                      *            *  ** *                           *       
          1 TTATAACTTCAGATCCTTAAAGTGTTGAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTC
          1 TTATAACTTCGGATCCTTAAAGTATTCCACACGATCCATTCCTTCGAGCAATTTTTCGAACATTC

               *   *        *                                *               
         66 CATTC-CCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCTAACAAGTTTTGGTCT
         66 CATGCTCGA-GAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCT

                                     *                   *     *      *      
        130 TT-AATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTTGTTTTTGGATGAACTTTCGAACT
        130 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACT

              *         * * *  *  
        194 TGCCAAACTTTTTCGAGTTATT
        195 TGTCAAACTTTTACTAATTCTT

              *        **   *    *    **   *            *                    
        216 TTTTAACTTCGTTTCCCTAAACTATTAAACAAGATCCATTCCTTAGAGCAATTTTTCGAACATTC
          1 TTATAACTTCGGATCCTTAAAGTATTCCACACGATCCATTCCTTCGAGCAATTTTTCGAACATTC

                               *              **           *           *     
        281 CATGCTCGAGAAATCACATAATTTGGTCTAAATAACTTGTCATTTTGTAAACAAGTTTTTGTCTT
         66 CATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTT

                      *                                       *              
        346 TGAATTAAAACCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGAAGAACTTCCGAACTT
        131 TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTT

                    *             
        411 GTCAAACTATTAC-AAGTTCTT
        196 GTCAAACTTTTACTAA-TTCTT

                            *            *      *    *                       
        432 TTATAACTTCGGATCCGTAAAGTATTCCAGACGATCTATTCTTTCGAGCAA-TTTTCTGAACATT
          1 TTATAACTTCGGATCCTTAAAGTATTCCACACGATCCATTCCTTCGAGCAATTTTTC-GAACATT

             * *            *    *                     **    *    *          
        496 CAACGCTCGAGAAATCGCATCGTTTGGTCTAAATAGTTTGTCACGTTGCGAACATGTTTTGGTCT
         65 CCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCT

                              *          *     * *                        *  
        561 TTGAATTAAAAACTTATTGACGTGAGAATAGTTTCCCACTTTGTTCTTGGACGAACTTCCGATCT
        130 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACT

             *          *    *    
        626 TATCAAACTTTTTCTAAATCTT
        195 TGTCAAACTTTTACTAATTCTT

                  *  * *            *                     *  *       *       
        648 TTATAAATTTGAATCCTTAAAG-ACTCCAACACGATCCATTCCTTCAAGTAATTTTTTGAACATT
          1 TTATAACTTCGGATCCTTAAAGTATTCC-ACACGATCCATTCCTTCGAGCAATTTTTCGAACATT

                            *                 *                              
        712 CCATGCTCG-GTAAATTACATCATTTGGTCTAAAAAGTTTGTCATTTTGCAAACAAGTTTTGGTC
         65 CCATGCTCGAG-AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTC

                  *                        *           *  *          *       
        776 TTTGAAATAAAAACTTATTTACGTGAGAATTATTTCTCTCTTTCTTGTTGGACGAACATCCGAAC
        129 TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAAC

                                    
        841 TTGTCAAACTTTTACTGAA-TCTT
        194 TTGTCAAACTTTTACT-AATTCTT

                  *  *  *              *                         *  *        
        864 TTATAAATTGGGTTCCTTAAAGTATTCAACA-GATCCATTCC-TCTGAGCAATATTCCGAACATT
          1 TTATAACTTCGGATCCTTAAAGTATTCCACACGATCCATTCCTTC-GAGCAATTTTTCGAACATT

            *   *                                      *                **   
        927 TCATACTCG-GCAAATCACATCATTTGGTCTAAATAGTTTGTCTTTTTGCAAACAAGTTTCAGTC
         65 CCATGCTCGAG-AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTC

                 *             
        991 TTTGAGTTAAAAACTTATT
        129 TTTGAATTAAAAACTTATT

       1010 AC


Statistics
Matches: 663,  Mismatches: 120, Indels: 22
        0.82            0.15        0.03

Matches are distributed among these distances:
 214    2  0.00
 215  215  0.32
 216  435  0.66
 217   11  0.02

ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39


Consensus pattern (216 bp):   
TTATAACTTCGGATCCTTAAAGTATTCCACACGATCCATTCCTTCGAGCAATTTTTCGAACATTC
CATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTT
TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTT
GTCAAACTTTTACTAATTCTT

Done.