Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005871.1 Kokia drynarioides strain JFW-HI SEQ_120194, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2137
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31


Found at i:1928 original size:11 final size:11

Alignment explanation


    Indices: 1912--1953  Score: 57
    Period size: 12  Copynumber: 3.5  Consensus size: 11

       1902 CAGTCACTTG

                       
       1912 AAAAAAGAAAA
          1 AAAAAAGAAAA

                        
       1923 AAAAAAGAGAAA
          1 AAAAAAGA-AAA

                         
       1935 AGAAAAAGAAGAA
          1 A-AAAAAGAA-AA

                  
       1948 AAAAAA
          1 AAAAAA

       1954 TTATATTTGC


Statistics
Matches: 28,  Mismatches: 0, Indels: 5
        0.85            0.00        0.15

Matches are distributed among these distances:
  11    8  0.29
  12   10  0.36
  13   10  0.36

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (11 bp):   
AAAAAAGAAAA

Found at i:1933 original size:13 final size:13

Alignment explanation


    Indices: 1912--1953  Score: 59
    Period size: 13  Copynumber: 3.2  Consensus size: 13

       1902 CAGTCACTTG

                         
       1912 AAAAA-AGAAAAA
          1 AAAAAGAGAAAAA

                        *
       1924 AAAAAGAGAAAAG
          1 AAAAAGAGAAAAA

                          
       1937 AAAAAGAAGAAAAA
          1 AAAAAG-AGAAAAA

               
       1951 AAA
          1 AAA

       1954 TTATATTTGC


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  12    5  0.19
  13   12  0.46
  14    9  0.35

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (13 bp):   
AAAAAGAGAAAAA
Done.