Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005873.1 Kokia drynarioides strain JFW-HI SEQ_120201, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2683
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35


Found at i:2117 original size:3 final size:3

Alignment explanation


    Indices: 2109--2137  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

       2099 GATCATCCCT

                                                  
       2109 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT

       2138 ATTCAATATC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69


Consensus pattern (3 bp):   
TTC

Done.