Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005882.1 Kokia drynarioides strain JFW-HI SEQ_120212, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1938
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39


Found at i:442 original size:16 final size:17

Alignment explanation


    Indices: 405--449  Score: 60
    Period size: 16  Copynumber: 2.8  Consensus size: 17

        395 ATTTATTAAA

                             
        405 ATAAT-ATTTAAATCAT
          1 ATAATAATTTAAATCAT

                              
        421 ATAATAATTTAAAT-ACT
          1 ATAATAATTTAAATCA-T

                         
        438 A-AATAATTTAAA
          1 ATAATAATTTAAA

        450 AAAATTAAAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
  16   17  0.63
  17   10  0.37

ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40


Consensus pattern (17 bp):   
ATAATAATTTAAATCAT
Done.