genome.fa.s5887.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005887.1 Kokia drynarioides strain JFW-HI SEQ_120223, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22749

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1016--1077	11	5.5	11	78	16	56	37	3	1	58	1.24
1025--1097	17	4.2	17	77	8	76	39	6	1	52	1.37
1033--1097	29	2.2	30	78	13	82	38	7	1	52	1.40
1832--1867	3	12.0	3	100	0	72	66	0	0	33	0.92
2939--3295	29	12.2	29	72	13	155	33	23	4	37	1.75
2940--3270	58	5.7	58	79	7	314	33	24	3	37	1.74
3045--3322	87	3.2	85	78	10	230	31	25	6	36	1.81
11995--12052	28	2.1	28	100	0	116	22	6	27	43	1.79
13941--14617	209	3.3	208	87	5	960	36	17	21	24	1.94
14954--15020	11	5.8	12	82	5	68	40	1	1	56	1.17
14954--15020	6	11.7	6	75	9	68	40	1	1	56	1.17
14940--15037	17	6.1	16	78	17	80	38	4	2	55	1.31
16828--16905	30	2.6	30	76	9	79	43	24	0	32	1.54
16871--17155	29	9.7	29	77	12	228	36	23	2	37	1.70
16871--17151	30	9.6	29	77	8	232	36	23	2	37	1.70
16902--17121	59	3.7	59	80	10	245	36	22	3	37	1.71
16957--17156	59	3.4	58	79	10	212	34	25	3	37	1.71
16958--17197	59	4.1	58	78	8	204	35	24	4	36	1.75
17047--17227	29	6.3	29	71	12	113	33	24	6	35	1.80
19755--19931	29	6.0	29	81	8	187	38	24	4	31	1.76
19755--19931	59	3.0	58	80	6	196	38	24	4	31	1.76
20106--20159	18	2.9	19	73	15	51	27	1	3	66	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21643--21698	30	2.0	28	82	10	69	48	5	0	46	1.25

Tables:   1

The End!