Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005888.1 Kokia drynarioides strain JFW-HI SEQ_120224, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3025
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.34


Found at i:597 original size:33 final size:33

Alignment explanation


    Indices: 555--622  Score: 127
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        545 TAAATATTAT

                           *                 
        555 AGATAGACTCTAATATGGTGACTTAAGTATTGA
          1 AGATAGACTCTAATAAGGTGACTTAAGTATTGA

                                             
        588 AGATAGACTCTAATAAGGTGACTTAAGTATTGA
          1 AGATAGACTCTAATAAGGTGACTTAAGTATTGA

              
        621 AG
          1 AG

        623 TTGTAATAGT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31


Consensus pattern (33 bp):   
AGATAGACTCTAATAAGGTGACTTAAGTATTGA

Found at i:1924 original size:7 final size:7

Alignment explanation


    Indices: 1912--1938  Score: 54
    Period size: 7  Copynumber: 3.9  Consensus size: 7

       1902 GTCACATGGC

                   
       1912 TTGGGTA
          1 TTGGGTA

                   
       1919 TTGGGTA
          1 TTGGGTA

                   
       1926 TTGGGTA
          1 TTGGGTA

                  
       1933 TTGGGT
          1 TTGGGT

       1939 CGGTTTGGGC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   20  1.00

ACGTcount: A:0.11, C:0.00, G:0.44, T:0.44


Consensus pattern (7 bp):   
TTGGGTA

Done.