Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005890.1 Kokia drynarioides strain JFW-HI SEQ_120229, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1203
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41


Found at i:1137 original size:21 final size:21

Alignment explanation


    Indices: 1108--1147  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1098 ACCTTATTTT

                *                
       1108 ATTTTACTAATAAAATAATGC
          1 ATTTCACTAATAAAATAATGC

                     *    *    
       1129 ATTTCACTAGTAAATTAAT
          1 ATTTCACTAATAAAATAAT

       1148 TTCATATATC


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40


Consensus pattern (21 bp):   
ATTTCACTAATAAAATAATGC
Done.