Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005892.1 Kokia drynarioides strain JFW-HI SEQ_120231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 852

Length: 1420
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35


Found at i:430 original size:221 final size:221

Alignment explanation


    Indices: 1--1420  Score: 2063
    Period size: 221  Copynumber: 6.4  Consensus size: 221

                        *   *                         *         *            
          1 AGGATGAAATTGATGACGTGGCATAAAACTATTGGAAAGGGAAAATATCCCTCTTTCATACAATC
          1 AGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTCATACAATC

                                  *              * *      *  *         **    
         66 CTTTCTCTTCTTCAATGGAAAAAGATTGAATGAAACAATAACACCATGTTA-TTGTGTCTTTTTT
         66 CTTTCTCTTCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTT

                                  *                   *                *     
        130 CCAATTA-TTTTACGCCACATCTGTATTTTCATTCTTAATTTAAACATTTTCATCCTGAGAAAAT
        131 CCAA-TAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAAT

                                       
        194 CAAATTAAAATTAAAATCCTGAAATTC
        195 CAAATTAAAATTAAAATCCTGAAATTC

                           *                **                              *
        221 AGGATGAAATTGTTGGTGTGGCATAAAACTATAAGAAAGGGATAATATCCCTGTTTCATACAATT
          1 AGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTCATACAATC

                                           *                                 
        286 CTTTCTCTTCTTCAATGGAAAAGGATTGAATAAAACAGTGACACCACGTCATTTGTGTCCCTTTT
         66 CTTTCTCTTCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTT

                 *                                                  *        
        351 CCAATTGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTTAAAAAATC
        131 CCAATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATC

                                      
        416 AAATTAAAATTAAAATCCTGAAATTC
        196 AAATTAAAATTAAAATCCTGAAATTC

                        *                             *                      
        442 AGGATGAAATTGATGATGTGGCATAAAACTATTGGAAAGGGAAAATATCCCTGTTTCATACAATC
          1 AGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTCATACAATC

                        *                               *           *        
        507 CTTTCTCTTCTTGAATGGAAAAGGATTGAATGAAACAGTGACACAACGTCATTTGTCTCCCTTTT
         66 CTTTCTCTTCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTT

                         *  * *          *                                  *
        572 CCAATAGTTTTACTCCGCTTCAGTATTTTGATTCTTAATTTCAACATTTTCATCCTGAAAAAATA
        131 CCAATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATC

               *                      
        637 AAAATAAAATTAAAATCCTGAAATTC
        196 AAATTAAAATTAAAATCCTGAAATTC

             **            *                        *         *              
        663 AAAATGAAATTGTTGCTGTGGCATAAAACTATTGGAAAGGAATAATATCCTTGTTTCATACAATC
          1 AGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTCATACAATC

                                  *       *    *        *  *                 
        728 CTTTCTCTTCTTCAATGGAAAATGATTGAACGAAAAAGTGACACAACTTCATTTGTGTCCCTTTT
         66 CTTTCTCTTCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTT

                            *            *             * *               *   
        793 CCAATAGTTTTACGCCGCATCAGTATTTTTATTCTTAATTTCATCCTTTTCATCCTGAAAATATC
        131 CCAATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATC

                 *                   *
        858 AAATTCAAATTAAAATCCTGAAATTT
        196 AAATTAAAATTAAAATCCTGAAATTC

                           *       *                            *   *        
        884 AGGATGAAATTGTTGGTGTGGCAAAAAACTATTGGAAAGGGATAATATCCCTATTTTATACAATC
          1 AGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTCATACAATC

                                 *             * *                           
        949 CTTTCTCTTCTTCAATGGAAACGGATTGAATGAAATACTGACACCACGTCATTTGTGTCCCTTTT
         66 CTTTCTCTTCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTT

             **              *    * *                *                *     *
       1014 CTTATAGTTTTACGCCATATCATTTTTTTCATTCTTAATTTTAACATTTTCATCCTGACAAAATA
        131 CCAATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATC

               *     *                
       1079 AAAATAAAAATAAAATCCTGAAATTC
        196 AAATTAAAATTAAAATCCTGAAATTC

                                              *    *      * **      *        
       1105 AGGATGAAATTGTTGATGTGGCATAAAACTATTGCAAAGTGATAATTTAACTGTTTAATACAATC
          1 AGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTCATACAATC

                           *                                    *   *        
       1170 CTTTCTCTTCTTCAACGGAAAAGGATTGAATGAAACAGTGACACCACGTCATCTGTATCCCTTTT
         66 CTTTCTCTTCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTT

             *    *          *                                               
       1235 CTAATAATTTTACGCCATATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAAT-
        131 CCAATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATC

                              *     * 
       1299 AAATTAAAATTAAAATCCAGAAATAC
        196 AAATTAAAATTAAAATCCTGAAATTC

               *           *                                    *            
       1325 AGGTTGAAATTGTTGGTGTGGCATAAAACTATTGGAAAGGGATAATATCCCTCTTTCATACAATC
          1 AGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTCATACAATC

                                           
       1390 CTTTCTCTTCTTCAATGGAAAAGGATTGAAT
         66 CTTTCTCTTCTTCAATGGAAAAGGATTGAAT


Statistics
Matches: 1069,  Mismatches: 129, Indels: 4
        0.89            0.11        0.00

Matches are distributed among these distances:
 220  211  0.20
 221  858  0.80

ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35


Consensus pattern (221 bp):   
AGGATGAAATTGTTGATGTGGCATAAAACTATTGGAAAGGGATAATATCCCTGTTTCATACAATC
CTTTCTCTTCTTCAATGGAAAAGGATTGAATGAAACAGTGACACCACGTCATTTGTGTCCCTTTT
CCAATAGTTTTACGCCACATCAGTATTTTCATTCTTAATTTCAACATTTTCATCCTGAAAAAATC
AAATTAAAATTAAAATCCTGAAATTC

Done.