Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005897.1 Kokia drynarioides strain JFW-HI SEQ_120238, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 904

Length: 1507
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:1061 original size:267 final size:266

Alignment explanation


    Indices: 574--1068  Score: 900
    Period size: 267  Copynumber: 1.9  Consensus size: 266

        564 AAAAACTGTT

                                                                             
        574 CTAGCAACATTAAAATTCATAGCTCAATTAAAGAGTTAATGATATCCTCTCATTGGCATTGTGTG
          1 CTAGCAACATTAAAATTCATAGCTCAATTAAAGAGTTAATGATATCCTCTCATTGGCATTGTGTG

                                                                             
        639 GATTGATAAATATGGAACGTCGTCACAGGTTGCTTATTCTCGAACGATCAATTTATCACAACCAT
         66 GATTGATAAATATGGAACGTCGTCACAGGTTGCTTATTCTCGAACGATCAATTTATCACAACCAT

                                                    **                       
        704 TTGTTAACAGTGATCATATTACTCATTAAGAAGACACGATGGTGACAATAAGATAAAATAGGATT
        131 TTGTTAACAGTGATCATATTACTCATTAAGAAGACACGATAATGACAATAAGATAAAATAGGATT

            *                                                                
        769 GTATTGAGTGAATGGATTTAACTCAAAGGAATCAGTATGTTGGGTACATGACTTGTGTATGGCAT
        196 ATATTGAGTGAATGGATTTAACTCAAA-GAATCAGTATGTTGGGTACATGACTTGTGTATGGCAT

                   
        834 GGCTTTA
        260 GGCTTTA

                *      *                                                *    
        841 CTAGGAACATTGAAATTCATAGCTCAATTAAAGAGTTAATGATATCCTCTCATTGGCATTTTGTG
          1 CTAGCAACATTAAAATTCATAGCTCAATTAAAGAGTTAATGATATCCTCTCATTGGCATTGTGTG

                                                                        *    
        906 GATTGATAAATATGGAACGTCGTCACAGGTTGCTTATTCTCGAACGATCAATTTATCACAGCCAT
         66 GATTGATAAATATGGAACGTCGTCACAGGTTGCTTATTCTCGAACGATCAATTTATCACAACCAT

                 *                                           *               
        971 TTGTTGACAGTGATCATATTACTCATTAAGAAGACACGATAATGACAATGAGATAAAATAGGATT
        131 TTGTTAACAGTGATCATATTACTCATTAAGAAGACACGATAATGACAATAAGATAAAATAGGATT

                                             
       1036 ATATTGAGTGAATGGATTTAACTCAAAGAATCA
        196 ATATTGAGTGAATGGATTTAACTCAAAGAATCA

       1069 AGGATATCAT


Statistics
Matches: 219,  Mismatches: 9, Indels: 1
        0.96            0.04        0.00

Matches are distributed among these distances:
 266    6  0.03
 267  213  0.97

ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32


Consensus pattern (266 bp):   
CTAGCAACATTAAAATTCATAGCTCAATTAAAGAGTTAATGATATCCTCTCATTGGCATTGTGTG
GATTGATAAATATGGAACGTCGTCACAGGTTGCTTATTCTCGAACGATCAATTTATCACAACCAT
TTGTTAACAGTGATCATATTACTCATTAAGAAGACACGATAATGACAATAAGATAAAATAGGATT
ATATTGAGTGAATGGATTTAACTCAAAGAATCAGTATGTTGGGTACATGACTTGTGTATGGCATG
GCTTTA
Done.