Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005899.1 Kokia drynarioides strain JFW-HI SEQ_120249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4401
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32


Found at i:377 original size:17 final size:16

Alignment explanation


    Indices: 346--379  Score: 50
    Period size: 17  Copynumber: 2.1  Consensus size: 16

        336 TTATATTTTA

                    *       
        346 TAATTAAAGTTATATT
          1 TAATTAAAATTATATT

                             
        362 TAATTAATAATTATATT
          1 TAATTAA-AATTATATT

             
        379 T
          1 T

        380 TAAAATAAAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    7  0.44
  17    9  0.56

ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53


Consensus pattern (16 bp):   
TAATTAAAATTATATT
Done.