Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005900.1 Kokia drynarioides strain JFW-HI SEQ_120250, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1213
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.35

Warning! 55 characters in sequence are not A, C, G, or T


Found at i:99 original size:17 final size:16

Alignment explanation


    Indices: 77--110  Score: 50
    Period size: 17  Copynumber: 2.1  Consensus size: 16

         67 ATTTATTTTA

                    *        
         77 AAATATAATTATTAATT
          1 AAATATAACT-TTAATT

                            
         94 AAATATAACTTTAATT
          1 AAATATAACTTTAATT

             
        110 A
          1 A

        111 TAAAATATAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    7  0.44
  17    9  0.56

ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44


Consensus pattern (16 bp):   
AAATATAACTTTAATT
Done.