Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005903.1 Kokia drynarioides strain JFW-HI SEQ_120254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1553
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:969 original size:72 final size:71

Alignment explanation


    Indices: 845--1075  Score: 363
    Period size: 72  Copynumber: 3.2  Consensus size: 71

        835 GGCACTGAAA

                           *                                            *    
        845 CTAATAAATCTGCAAAAGCTTTCTCTCTGTAATTTGCCCAATTTAACGTCGCTTCCGGAGTGGAT
          1 CTAATAAATCTGCAAGAGCTTTCTCTCTG-AATTTGCCCAATTTAACGTCGCTTCCGGAGGGGAT

                   
        910 TCAACAT
         65 TCAACAT

                             *                           * *                 
        917 CTAATAAATCTGCAAGATCTTTCTCTCTCGAATTTGCCCAATTTAGCATCGCTTCCGGAGGGGAT
          1 CTAATAAATCTGCAAGAGCTTTCTCTCT-GAATTTGCCCAATTTAACGTCGCTTCCGGAGGGGAT

                   
        982 TCAACAT
         65 TCAACAT

                                    *                                        
        989 CTAATAAATCTGCAAGAGCTTTCTTTCTGGAATTTGCCCAATTTAACGTCGCTTCCGGAGGGGAT
          1 CTAATAAATCTGCAAGAGCTTTCTCTCT-GAATTTGCCCAATTTAACGTCGCTTCCGGAGGGGAT

                   
       1054 TCAACAT
         65 TCAACAT

                 *   *     
       1061 CTAATCAATTTGCAA
          1 CTAATAAATCTGCAA

       1076 TGGTTAAATA


Statistics
Matches: 146,  Mismatches: 12, Indels: 2
        0.91            0.08        0.01

Matches are distributed among these distances:
  72  145  0.99
  73    1  0.01

ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32


Consensus pattern (71 bp):   
CTAATAAATCTGCAAGAGCTTTCTCTCTGAATTTGCCCAATTTAACGTCGCTTCCGGAGGGGATT
CAACAT
Done.