Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000591.1 Kokia drynarioides strain JFW-HI SEQ_111524, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2368
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32


Found at i:2052 original size:31 final size:31

Alignment explanation


    Indices: 2014--2100  Score: 115
    Period size: 29  Copynumber: 2.9  Consensus size: 31

       2004 AACACAAAAA

                     *                  *  
       2014 TAATCACTTTTGTTTATTTCATATTATATTT
          1 TAATCACTTATGTTTATTTCATATTATACTT

                              **      *    
       2045 TAATCACTTATGTTTA--AAATATTACACTT
          1 TAATCACTTATGTTTATTTCATATTATACTT

                                       
       2074 TAATCACTTATGTTTATTTCATATTAT
          1 TAATCACTTATGTTTATTTCATATTAT

       2101 CGTTTTTGGG


Statistics
Matches: 46,  Mismatches: 8, Indels: 4
        0.79            0.14        0.07

Matches are distributed among these distances:
  29   25  0.54
  31   21  0.46

ACGTcount: A:0.31, C:0.11, G:0.03, T:0.54


Consensus pattern (31 bp):   
TAATCACTTATGTTTATTTCATATTATACTT

Done.