Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005910.1 Kokia drynarioides strain JFW-HI SEQ_120268, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9298
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Found at i:589 original size:20 final size:21
Alignment explanation
Indices: 550--590 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
540 GAGAAATCAC
*
550 ATCATTTGGTCAAAATAGTTT
1 ATCATTTGGTCAAAAGAGTTT
*
571 ATCATTTTGT-AAAAGAGTTT
1 ATCATTTGGTCAAAAGAGTTT
591 TGGACTGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (21 bp):
ATCATTTGGTCAAAAGAGTTT
Found at i:2539 original size:62 final size:62
Alignment explanation
Indices: 2442--2565 Score: 194
Period size: 62 Copynumber: 2.0 Consensus size: 62
2432 AATTAATAAT
* * *
2442 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAA
1 AACTTAGTTACATGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATCAAA
* * *
2504 AACTTATTTACATGAAAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAA
1 AACTTAGTTACATGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATCAAA
2566 CTTTTACGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTAGTTACATGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATCAAA
Found at i:2825 original size:278 final size:279
Alignment explanation
Indices: 2221--2843 Score: 824
Period size: 278 Copynumber: 2.2 Consensus size: 279
2211 TCTTTAAATT
* ** *
2221 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
* * * *
2286 CTTTCATGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTGAGCAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGAGGATACATTCCTTGAGCAA
* *
2351 ATTTCCAAACATTCCTAGCTCGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
131 ATTTCCAAACATTCCTAACTCGAGAAATCACACAATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* * * *
2416 CAAGTTTTGGACTGTTAATTAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
196 CAAGTTTTGGACTGTGAATT-ATAACAACTTAGTTACATGAGAATTGGTTCTCTCTTGGTTCTTG
*
2481 GACGAACTTCCGAACTTATC
260 GACGAACTTCCAAACTTATC
* * * *
2501 AAAAACTTATTTACATGAAAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
* * *
2566 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGAGGATACATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGAGGATACATTCC-TTGAGCA
* *** ** * * *
2631 ATTTTTTGAACATTCC-ACACTCCGA-AAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
130 AATTTCCAAACATTCCTA-ACT-CGAGAAATCACACAATTTGGTCAAAATAGTTTGTCATTTTGT
* *
2694 AAACAAGTTTTGGTC-GCTGAA-T-TAACAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTC
193 AAACAAGTTTTGGACTG-TGAATTATAACAACTTAGTTACATGAGAATTGGTTCTCTCTTGGTTC
*
2756 TTGGACGAACTTCCAAACTTGTC
257 TTGGACGAACTTCCAAACTTATC
* * * *
2779 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCATGGATGAACTTCCGAAATTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
2844 AACTTATTTT
Statistics
Matches: 297, Mismatches: 42, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
278 114 0.38
280 110 0.37
281 70 0.24
282 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (279 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGAGGATACATTCCTTGAGCAA
ATTTCCAAACATTCCTAACTCGAGAAATCACACAATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTGAATTATAACAACTTAGTTACATGAGAATTGGTTCTCTCTTGGTTCTTGG
ACGAACTTCCAAACTTATC
Found at i:2903 original size:63 final size:62
Alignment explanation
Indices: 2720--2906 Score: 230
Period size: 62 Copynumber: 3.0 Consensus size: 62
2710 CTGAATTAAC
* * * *
2720 AACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
2782 AACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCATGGATGAACTTCCGAAATTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
2844 AACTTATTTTATGTAAGAATTGTTTCTCTCCTGGTTTTTGGACGAACATCTGAACTTGTCAAA
1 AACTTA-TTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
2907 CTTTTTCGAT
Statistics
Matches: 105, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
62 60 0.57
63 45 0.43
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:3069 original size:340 final size:340
Alignment explanation
Indices: 2442--3108 Score: 888
Period size: 340 Copynumber: 2.0 Consensus size: 340
2432 AATTAATAAT
* * *
2442 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCATGGACGAACTTCCGAAATTATCAAAAAC
* * *
2507 TTATTTACATGAAAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAACTTTTA
66 TTATTTACATGAAAATTGTTTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * * *
2572 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGAGGATACATTCCTTTGAGCAATTTTT
131 CGATTTCTCTTATAACTTCGATTCCTGAAAGTATTCAAGACGATACACTCCTTCGAGCAATTTTC
** * * * *
2637 TGAACATTCCACACTCCGAAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
196 CAAACATTCCACACTCCGAAAATCGCATAATTTGGTCTAAATAGTTTCTCATTTTGTAAACAAGA
*
2702 TTTGGTCGCTGAATTAACAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACT
261 TTTGGTCGCTCAATTAACAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACT
2767 TCCAAACTTGTCAAA
326 TCCAAACTTGTCAAA
* * * *
2782 AACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCATGGATGAACTTCCGAAATTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCATGGACGAACTTCCGAAATTATCAAAAAC
* * *
2847 TTATTT-TATGTAAGAATTGTTTCTCTCCTGGTTTTTGGACGAACATCTGAACTTGTCAAACTTT
66 TTATTTACATG-AA-AATTGTTTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * * *
2911 TTCGA-TTCTCTTATAACTTCGATTCCTGAAAGTATTCATGACGATCCACTCCTTCGAGCTATTT
129 TACGATTTCTCTTATAACTTCGATTCCTGAAAGTATTCAAGACGATACACTCCTTCGAGCAATTT
*** ** * * *
2975 TCCAAACATTCCTTGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTCTCATTTTGTAAACAG
194 TCCAAACATTCCACACTCCGAAAATCGCATAATTTGGTCTAAATAGTTTCTCATTTTGTAAACAA
* ** * * * * *
3040 GATTTGTTCTTTCAATTAAGAACTTATTTACGTGAGAATTGTTTCTTTCTTGGTTCTTGGATGAA
259 GATTTGGTCGCTCAATTAACAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAA
3105 CTTC
324 CTTC
3109 TGAACTTTTC
Statistics
Matches: 279, Mismatches: 46, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
339 3 0.01
340 227 0.81
341 49 0.18
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.40
Consensus pattern (340 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCATGGACGAACTTCCGAAATTATCAAAAAC
TTATTTACATGAAAATTGTTTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTCTTATAACTTCGATTCCTGAAAGTATTCAAGACGATACACTCCTTCGAGCAATTTTC
CAAACATTCCACACTCCGAAAATCGCATAATTTGGTCTAAATAGTTTCTCATTTTGTAAACAAGA
TTTGGTCGCTCAATTAACAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACT
TCCAAACTTGTCAAA
Found at i:3232 original size:215 final size:216
Alignment explanation
Indices: 2841--3770 Score: 1021
Period size: 215 Copynumber: 4.3 Consensus size: 216
2831 CGAAATTGTC
* * * *
2841 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCCTGGTTTTTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTA-TTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
* * * * * *
2906 ACTTTTTCGA-TTCTCTTATAACTTCGATTCCTGAAAGTATTCATGACGATCCACTCCTTCGAGC
65 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * ** *
2970 TATTTTCCAAACATTCCTTGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTCTCATTTTGTA
130 AATTTTCCAAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * *
3035 AACAGGATTTGTTCTTTCAATT
195 AACAAGTTTTGGTCTTTGAATT
* * * * *
3057 AAGAACTTATTTACGTGAGAATTGTTTCTTTCTTGGTTCTTGGATGAACTTCTGAACTTTTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
* * * *
3122 CTTTTACGAGTTCTTTTATAACTTCAGTACCTTAAACTATTCAAGACAATCCATTCCTTCGAG-A
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * ** * * * * *
3186 ATTTTTCGAGCATTCCACGCTCATAAAATTGCATCGTATT-GTCTAAAAATTTTGTCATTTCGTA
131 ATTTTCCAAACATTCCATGCTCAGGAAATCGCATCAT-TTGGTCTAAATAGTTTGTCATTTTGTA
* *
3250 AACATGTTTTGGTTTTTGAATT
195 AACAAGTTTTGGTCTTTGAATT
* * * * *
3272 AAAAACATATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTAGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
** * * * *
3337 CTTTTGTGATTTCTTTTATAACTTCGGTT-CTTGAAAGTATTCAAGATGATCTATTTCTTCGAGC
66 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTCGAGC
* * * * * *
3401 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTTGGTCTAAATAGTTTGTCAGTTGGT
130 AATTTTCCAAACATTCCATGCTCAGGAAATCGCATCA-TTTGGTCTAAATAGTTTGTCATTTTGT
*
3466 AAACAAGTTTTGGTGTTTGAATT
194 AAACAAGTTTTGGTCTTTGAATT
* * * ** * *
3489 AAAAACTTATTTACATAAGAATTATTTCTCTCTCTTCGTTCTTGGAATAA-TTCTCGAACATGTG
1 AAAAACTTATTTACGTAAGAATT-GTT-TCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTC
*
3553 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-T
63 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
3617 GCAATTTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTAGTCAAAATAGTTTATCATTTT
128 GCAATTTTCCAAACATTCCATGCTCAG-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * *
3681 GTAAATAAGTTTTGGACTGTAAATT
192 GTAAACAAGTTTTGGTCTTTGAATT
* * *
3706 AAAAACTTAGTTACGTGAA-ACTTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGT-AAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
3770 A
65 A
3771 AACTTATTTA
Statistics
Matches: 584, Mismatches: 117, Indels: 27
0.80 0.16 0.04
Matches are distributed among these distances:
214 3 0.01
215 252 0.43
216 90 0.15
217 120 0.21
218 39 0.07
219 77 0.13
220 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
ATTTTCCAAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGTCTTTGAATT
Found at i:3695 original size:434 final size:430
Alignment explanation
Indices: 2841--3770 Score: 1129
Period size: 434 Copynumber: 2.2 Consensus size: 430
2831 CGAAATTGTC
* * * *
2841 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCCTGGTTTTTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTA-TTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* *
2906 ACTTTTTCGATTCTCTTATAACTTCGATTCCTGAAAGTATTCATGACGATCCACTCCTTCGAGCT
65 ACTTTTTCGATTCTCTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCACTCCTTCGAGCA
* * * * *
2971 ATTTTCCAAACATTCCTTGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTCTCATTTTGTAA
130 ATTTTCCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTCTCAGTTGGTAA
* * * * * * *
3036 ACAGGATTTGTTCTTTCAATTAAGAACTTATTTACGTGAGAATTGTTTCTTTCTTGGTTCTTGGA
195 ACAAGATTTGGTCTTTCAATTAAAAACTTATTTACATAAGAATTATTTCTTTCTTCGTTCTTGGA
* *
3101 TGAACTTCTGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTCAGTACCTTAAACTATTCAA
260 TGAACTTCTGAACATGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTACCTTAAACTATTCAA
* * * * ** *
3166 GACAATCCATTCCTTCGAGAATTTTTCGAGCATTCCACGCTCATAAAATTGCATCGTATTGTCTA
325 GACAATCCATTCCTTCGACAATTTTCCAAACATTCCACGCTCATAAAATCACATCATATTGTCTA
* * * ** * *
3231 AAAATTTTGTCATTTCGTAAACATGTTTTGGTTTTTGAATT
390 AAAAGTTTATCATTTCGTAAACAAGTTTTGGACTGTAAATT
* * *
3272 AAAAACATATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTAGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * *
3337 CTTTTGT-GATTTCTTTTATAACTTCGGTTCTTGAAAGTATTCAAGATGATCTATTTCTTCGAGC
66 CTTTT-TCGA-TTCTCTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCACTCCTTCGAGC
* * *
3401 AATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTTGGTCTAAATAGTTTGTCAGTTGGT
129 AATTTTCCAAACATTCCATGCTCGGGAAATCGCATAA-TTTGGTCTAAATAGTTTCTCAGTTGGT
* * *
3466 AAACAAGTTTTGGTGTTTGAATTAAAAACTTATTTACATAAGAATTATTTCTCTCTCTTCGTTCT
193 AAACAAGATTTGGTCTTTCAATTAAAAACTTATTTACATAAGAATTATTTCT-T-TCTTCGTTCT
* * * *
3531 TGGAAT-AA-TTCTCGAACATGTGAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
256 TGG-ATGAACTTCT-GAACATGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTACCTTAAACT
* * *
3594 ATTCAAGACGATCCATTCCTTCTG-CAATTTTCCAAACATTCCATGCTCGA-GAAATCACATCAT
319 ATTCAAGACAATCCATTCCTTC-GACAATTTTCCAAACATTCCACGCTC-ATAAAATCACATCAT
* *
3657 -TTAGTC-AAAATAGTTTATCATTTTGTAAATAAGTTTTGGACTGTAAATT
382 ATT-GTCTAAAA-AGTTTATCATTTCGTAAACAAGTTTTGGACTGTAAATT
* * *
3706 AAAAACTTAGTTACGTGAA-ACTTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGT-AAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
3770 A
65 A
3771 AACTTATTTA
Statistics
Matches: 422, Mismatches: 65, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
430 57 0.14
431 86 0.20
432 67 0.16
433 11 0.03
434 195 0.46
435 6 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (430 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTTCGATTCTCTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
TTTTCCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTCTCAGTTGGTAAA
CAAGATTTGGTCTTTCAATTAAAAACTTATTTACATAAGAATTATTTCTTTCTTCGTTCTTGGAT
GAACTTCTGAACATGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTACCTTAAACTATTCAAG
ACAATCCATTCCTTCGACAATTTTCCAAACATTCCACGCTCATAAAATCACATCATATTGTCTAA
AAAGTTTATCATTTCGTAAACAAGTTTTGGACTGTAAATT
Found at i:3808 original size:62 final size:62
Alignment explanation
Indices: 3706--3832 Score: 175
Period size: 62 Copynumber: 2.0 Consensus size: 62
3696 ACTGTAAATT
* * *
3706 AAAAACTTAGTTACGTGAAACTTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTAGTTACGTGAAACTTGTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTC
* * * *
3768 AAAAACTTATTTACGTGAGTA-TTGTTTCTCTGTTTCTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTAGTTACGTGA-AACTTGTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTC
3830 AAA
1 AAA
3833 CTTTTACGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
62 56 0.98
63 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTAGTTACGTGAAACTTGTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTC
Found at i:4154 original size:216 final size:216
Alignment explanation
Indices: 3768--4264 Score: 617
Period size: 216 Copynumber: 2.3 Consensus size: 216
3758 CGAACTTGTC
* * * *
3768 AAAAACTTATTTACGTGAGTATTGTTTCTCTGTT-TCTTCTTGGACGAACATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGT-TTCTTGGACGAACTTCCAAACTTATCAA
* * * * *
3832 ACTTTTACGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATAATTCATCCCTTCTAGA
65 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGATAATCCATCCCTTCTAGA
* * * * * *
3897 AATATTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 AATATTCCAAACATTCCATGCTCGGAAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTA
* ** *
3962 AACAAGTTTTGTTCTTTAAATT
195 AACAACTTTTGGACTGTAAATT
* ***
3984 AAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGTTTCTTGGACGAACTTTTGAACTTATCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTATCAAA
* ** *
4049 CTTTCATGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGA-AGATCCATTCCTT-TGAG
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGATA-ATCCATCCCTTCT-AG
4112 CAAAT-TTCCAAACATTCCATGCTC-GAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTT
129 -AAATATTCCAAACATTCCATGCTCGGA-AAATCACACCATTTGGTCAAAATAGTTTGTCATTTT
*
4175 GTAAACAACTTTTGGACTGTCAATT
192 GTAAACAACTTTTGGACTGTAAATT
* * * * *
4200 AATAACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTATCAAA
4265 AACTTATTTA
Statistics
Matches: 239, Mismatches: 37, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
215 4 0.02
216 230 0.96
217 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTATCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGATAATCCATCCCTTCTAGAA
ATATTCCAAACATTCCATGCTCGGAAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAACTTTTGGACTGTAAATT
Found at i:4239 original size:494 final size:492
Alignment explanation
Indices: 3272--4543 Score: 1798
Period size: 494 Copynumber: 2.6 Consensus size: 492
3262 TTTTTGAATT
* * *
3272 AAAAACATATTTACGTAAGAATTGTTTCTCTCTTGGC-TCTTAGACGAACATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGACGAACATCCGAACTTGTCAA
** * *
3336 ACTTTTGTGATTTCTTTTATAACTTCGGTTCTTGAAAGTATTCAAGATGA-TCTATTTCTTCGAG
65 ACTTTTACGATTTCTTTTATAACTTCGATTCTTGAAAGTATTCAAGATGATTC-ATTCCTTCGAG
* * *
3400 CAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTTGGTCTAAATAGTTTGTCAGTTGG
129 CAATTTTTCGAACATTCCATGCTCGGAAAATCGCATAA-TTTGGTCTAAATAGTTTGTCATTTTG
* * *
3465 TAAACAAGTTTTGGTGTTTGAATTAAAAACTTATTTACATAAGAATTATTTCTCTCTCTTCGTTC
193 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-TTT-TCTCTCTT-GTTC
** * * * *
3530 TTGGAATAA-TTCTCGAACATGTGAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
255 TTGGACGAACTT-TCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGT
* * *
3594 ATTCAAGACGATCCATTCCTTCTGCAATTTTCCAAACATTCCATGCTCGAGAAATCACATCATTT
319 ATTCAAGAAGATCCATTCCTTCTGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTT
* *
3659 AGTCAAAATAGTTTATCATTTTGTAAATAAGTTTTGGACTGTAAATTAAAAACTTAGTTACGTGA
384 AGTCAAAATAGTTTATCATTTTGTAAACAACTTTTGGACTGTAAATTAAAAACTTAGTTACGTGA
* *
3724 AACTTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
449 AACTTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
3768 AAAAACTTATTTACGTGAGTATTGTTTCTCTGTTTCTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAA
* *** * * * *
3833 CTTTTACGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATAATTCATCCCTTCTAGAA
66 CTTTTACGATTTCTTTTATAACTTCGATTCTTGAAAGTATTCAAGATGATTCATTCCTTCGAGCA
* * * *
3898 ATATTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
131 ATTTTTCGAACATTCCATGCTCGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
3963 ACAAGTTTTGTTCTTTAAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGTTTCTTGGA
196 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTG-TTCTTGGA
* * *
4028 CGAACTTTTGAACTTATCAAACTTTCATGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAA
260 CGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAA
*
4093 GAAGATCCATTCCTT-TGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTC
325 GAAGATCCATTCCTTCT--GCAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTAGTC
* * *
4157 AAAATAGTTTGTCATTTTGTAAACAACTTTTGGACTGTCAATTAATAACTTAGTTACGTGAGAA-
388 AAAATAGTTTATCATTTTGTAAACAACTTTTGGACTGTAAATTAAAAACTTAGTTACGTGA-AAC
4221 TTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTC
452 TTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
4262 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTCCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
4327 CTTTTACGATTTCTTTTATAACTTCAATTCTTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
66 CTTTTACGATTTCTTTTATAACTTCGATTCTTGAAAGTATTCAAGATGATTCATTCCTTCGAGCA
* * * *
4392 ATTTTTCGAACATTCCATGCTCCGAAAAATTGCATAATTTGGTCTAGATAGTTTGTCTTTTTGTA
131 ATTTTTCGAACATTCCATGCT-CGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTA
* * ***
4457 AACAGGTTTTGGTCGTTGAATTAAAAACTTATTTACGTGAGAATTGAATCTCTCTTGGTTCTTGG
195 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTT-GTTCTTGG
*
4522 ACGAACTTCCGAACTTGTCAAA
259 ACGAACTTTCGAACTTGTCAAA
4544 AACTTATTTA
Statistics
Matches: 682, Mismatches: 85, Indels: 19
0.87 0.11 0.02
Matches are distributed among these distances:
492 2 0.00
493 83 0.12
494 276 0.40
495 180 0.26
496 139 0.20
497 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (492 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGATTCTTGAAAGTATTCAAGATGATTCATTCCTTCGAGCA
ATTTTTCGAACATTCCATGCTCGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGTTCTTGGAC
GAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAG
AAGATCCATTCCTTCTGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTAGTCAAA
ATAGTTTATCATTTTGTAAACAACTTTTGGACTGTAAATTAAAAACTTAGTTACGTGAAACTTGT
TTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:4281 original size:62 final size:62
Alignment explanation
Indices: 4203--4326 Score: 203
Period size: 62 Copynumber: 2.0 Consensus size: 62
4193 GTCAATTAAT
* *
4203 AACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTCCTTGGACGAACATCCAAACTTGTCAAA
* * *
4265 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTCCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTCCTTGGACGAACATCCAAACTTGTCAAA
4327 CTTTTACGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (62 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTCCTTGGACGAACATCCAAACTTGTCAAA
Found at i:4581 original size:62 final size:62
Alignment explanation
Indices: 4479--4605 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
4469 TCGTTGAATT
* *
4479 AAAAACTTATTTACGTGAGAATTGAATCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGAATCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTC
* ** * *
4541 AAAAACTTATTTACGTGAGTATTGTTTCTCTGTTTCTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGAATCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTC
4603 AAA
1 AAA
4606 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGAATCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTC
Found at i:4927 original size:216 final size:216
Alignment explanation
Indices: 4541--5029 Score: 626
Period size: 216 Copynumber: 2.3 Consensus size: 216
4531 CGAACTTGTC
* * * *
4541 AAAAACTTATTTACGTGAGTATTGTTTCTCTGTT-TCTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGT-TTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
4605 ACTTTTACGATTTATTTTATAACTTCGTTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGA
65 ACTTTCACGAGTTATTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGA
* * * * * * *
4670 AATATTTCGAACATTCCATGCTCGAAAAATCTCATCATTTGGTCTAAATATTTTGTTATTTTGTA
130 AATATTCCAAACATTCCATGCTCGAAAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTA
* * *
4735 AACAAGTTTTGGTCTTTAAATT
195 AACAACTTTTGGACTGTAAATT
*
4757 AAAAACTTATTTACGTGAGAATT-TTCTCTCTCTTGTTTCTTGGACGAACTTTTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTT-TCTCTCTTGTTTCTTGGACGAACTTTCGAACTTGTCAA
* ** *
4821 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAG
65 ACTTTCACGAGTTATTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG
**
4885 CAAAT-TTCCAAACATTCCATGCTCGAGTAATCACACCATTTGGTCAAAATAGTTTGTCATTTTG
129 -AAATATTCCAAACATTCCATGCTCGAAAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTG
*
4949 TAAACAACTTTTGGACTGTCAATT
193 TAAACAACTTTTGGACTGTAAATT
* * * * *
4973 AATAACTTAGTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTTCGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGGACGAACTTTCGAAC
5030 CTATCAAAAA
Statistics
Matches: 235, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
215 3 0.01
216 225 0.96
217 7 0.03
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTATTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
ATATTCCAAACATTCCATGCTCGAAAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAACTTTTGGACTGTAAATT
Found at i:4974 original size:773 final size:771
Alignment explanation
Indices: 3489--5099 Score: 2618
Period size: 773 Copynumber: 2.1 Consensus size: 771
3479 TGTTTGAATT
* * * * ** * *
3489 AAAAACTTATTTACATAAGAATTATTTCTCTCTCTTCGTTCTTGGAATAA-TTCTCGAACATGTG
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTCTTGGTTCTTGGACGAACTTC-CGAACTTGTC
** *
3553 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCTG
63 AAACTTTTACGAGTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGACGATCCATTCCTTCAG
* *
3618 CAATTTTCCAAACATTCCATGCTCGAGAAATCACATCATTTAGTCAAAATAGTTTATCATTTTGT
128 CAATTTTCCAAACATTCCATGCTCGAAAAATCACATAATTTAGTCAAAATAGTTTATCATTTTGT
* **
3683 AAATAAGTTTTGGACTGTAAATTAAAAACTTAGTTACGTGAAACTTGTTTCTCTCTTGGTTCTTG
193 AAACAAGTTTTGGACTGTAAATTAAAAACTTAGTTACGTGAAACTTGAATCTCTCTTGGTTCTTG
3748 GACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTGTTTCTTCTTGGAC
258 GACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTGTTTCTTCTTGGAC
*
3813 GAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAG
323 GAACATCCAAACTTGTCAAACTTTTACGATTTATTTTATAACTTCGTTTCCAAAAAGTATTCAAG
* * *
3878 ATAATTCATCCCTTCTAGAAATATTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTA
388 ATAATCCATCCCTTCTAGAAATATTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTA
*
3943 AATAGTTTGTCATTTTGTAAACAAGTTTTGTTCTTTAAATTAAAAACTTATTTACGTGAGAATTT
453 AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTT
* *
4008 TTTCTCTCTTGTTTCTTGGACGAACTTTTGAACTTATCAAACTTTCATGAGTTCTTTTATAACTT
518 TCTCTCTCTTGTTTCTTGGACGAACTTTTGAACTTATCAAACTTTCACGAGTTCTTTTATAACTT
4073 AGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGA
583 AGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGA
4138 GAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGACTGTCAATTAAT
648 GAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGACTGTCAATTAAT
* *
4203 AACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTC
713 AACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACCTATC
* *
4262 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTCCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
4327 CTTTTACGATTTCTTTTATAACTTCAATT-CTTGAAAGTATTCAAGATGATCCATTCTTTCGAGC
66 CTTTTACGAGTTCTTTTATAACTTCAATTCCTT-AAAGTATTCAAGACGATCCATTCCTTC-AGC
* * ** * * * * *
4391 AATTTTTCGAACATTCCATGCTCCGAAAAATTGCATAATTTGGTCTAGATAGTTTGTCTTTTTGT
129 AATTTTCCAAACATTCCATGCT-CGAAAAATCACATAATTTAGTCAAAATAGTTTATCATTTTGT
* * * *
4456 AAACAGGTTTTGGTC-GTTGAATTAAAAACTTATTTACGTGAGAA-TTGAATCTCTCTTGGTTCT
193 AAACAAGTTTTGGACTG-TAAATTAAAAACTTAGTTACGTGA-AACTTGAATCTCTCTTGGTTCT
4519 TGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTGTTTCTTCTTGG
256 TGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTGTTTCTTCTTGG
*
4584 ACGAACTTCCAAACTTGTCAAACTTTTACGATTTATTTTATAACTTCGTTTCCAAAAAGTATTCA
321 ACGAACATCCAAACTTGTCAAACTTTTACGATTTATTTTATAACTTCGTTTCCAAAAAGTATTCA
* *
4649 AGATAATCCATTCCTTCTAGAAATATTTCGAACATTCCATGCTCGAAAAATCTCATCATTTGGTC
386 AGATAATCCATCCCTTCTAGAAATATTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTC
* *
4714 TAAATATTTTGTTATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAAT
451 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAAT
*
4779 TTTCTCTCTCTTGTTTCTTGGACGAACTTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAAC
516 TTTCTCTCTCTTGTTTCTTGGACGAACTTTTGAACTTATCAAACTTTCACGAGTTCTTTTATAAC
*
4844 TTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTC
581 TTAGGTTCCTTAAAGTATTCAAGAAGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTC
*
4909 GAGTAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGACTGTCAATTA
646 GAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGACTGTCAATTA
* * *
4974 ATAACTTAGTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTTCGAACCTATC
711 ATAACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACCTATC
* *
5035 AAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
5100 AACTTATTTA
Statistics
Matches: 774, Mismatches: 58, Indels: 12
0.92 0.07 0.01
Matches are distributed among these distances:
770 3 0.00
771 80 0.10
772 27 0.03
773 662 0.86
774 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (771 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTTACGAGTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGACGATCCATTCCTTCAGCAA
TTTTCCAAACATTCCATGCTCGAAAAATCACATAATTTAGTCAAAATAGTTTATCATTTTGTAAA
CAAGTTTTGGACTGTAAATTAAAAACTTAGTTACGTGAAACTTGAATCTCTCTTGGTTCTTGGAC
GAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTGTTTCTTCTTGGACGAA
CATCCAAACTTGTCAAACTTTTACGATTTATTTTATAACTTCGTTTCCAAAAAGTATTCAAGATA
ATCCATCCCTTCTAGAAATATTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAAT
AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTTTCT
CTCTCTTGTTTCTTGGACGAACTTTTGAACTTATCAAACTTTCACGAGTTCTTTTATAACTTAGG
TTCCTTAAAGTATTCAAGAAGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAA
ATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGACTGTCAATTAATAAC
TTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACCTATC
Found at i:5062 original size:62 final size:62
Alignment explanation
Indices: 4976--5153 Score: 241
Period size: 62 Copynumber: 2.9 Consensus size: 62
4966 GTCAATTAAT
* * *
4976 AACTTAGTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTTCGAACCTATCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACCTATCAAA
* * * * *
5038 AATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACCTATCAAA
* * *
5100 AACTTATTTACGTGAAAATTGATTCTCTCTTGGTTCTTGGATGAACATTT-GAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTTCGAAC
5154 TTTTCAAACT
Statistics
Matches: 101, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
62 99 0.98
63 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACCTATCAAA
Found at i:5495 original size:63 final size:61
Alignment explanation
Indices: 5313--5502 Score: 195
Period size: 62 Copynumber: 3.0 Consensus size: 61
5303 TCGCTGAATT
* * ** * *
5313 AAAAACTTATTTACGTGAGATTTGGTTCTCTATTGGTTCTTGGACGAACT-TCCAACCTTGTC
1 AAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTCT-GAA-CTTGTC
* * * * *
5375 AAAAACTTATTTACATGAGTATTGTTTCTGTCTTAGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTCT-GAACTTGTC
* *
5437 AAAAACTTATTT-TATGTTAGAATTATTTCTCTCTTGGTTTTTGGACGAACATCTGAACTTGTC
1 AAAAACTTATTTACATG--AGAATTATTTCTCTCTTGGTTCTTGGACGAAC-TCTGAACTTGTC
5500 AAA
1 AAA
5503 CTTTTATGAT
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
61 3 0.03
62 61 0.56
63 43 0.39
64 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (61 bp):
AAAAACTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTCTGAACTTGTC
Found at i:5612 original size:341 final size:338
Alignment explanation
Indices: 4757--5704 Score: 1192
Period size: 340 Copynumber: 2.8 Consensus size: 338
4747 TCTTTAAATT
*
4757 AAAAACTTATTTACGTGAGAATT-TTCTCTCTCTT-GTTTCTTGGACGAACTTTTGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTATT-TCTCTCTTGGTTT-TTGGACGAACATTTGAACTTGTCA
* * * *
4820 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTTGA
64 AACTTTTACGATTTCTTTTATAACTTCGGTT-CTTGAAAGTATTCAAGATGATCCATTCC-TTGA
* * * * * * *
4884 GCAAATTTCCAAACATTCCATGCTCGAGTAATCACACCATTTGGTCAAAATAGTTTGTCATTTTG
127 GCTATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * * *
4949 TAAACAACTTTTGGACTGTCAATTAATAACTTAGTTATGTGAGAATTGTTTCTCTCCTGGTTCTT
192 TAAACAAATTTTGGAC-GTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
5014 GGACGAACTTTCGAACCTATCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
256 GGACGAACTTTCCAACCTATCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGA
5079 CGAACTTCCAAACTTGTC
321 CGAACTTCCAAACTTGTC
* * * *
5097 AAAAACTTATTTACGTGAAAATTGA-TTCTCTCTTGGTTCTTGGATGAACATTTGAACTTTTCAA
1 AAAAACTTATTTACGTGAGAATT-ATTTCTCTCTTGGTTTTTGGACGAACATTTGAACTTGTCAA
** *
5161 ACTTTTACGATTTCTTTTATAACTTCAATTCCTGAAAGTATTCAAGATGATCCATTCCCTTGAG-
65 ACTTTTACGATTTCTTTTATAACTTCGGTTCTTGAAAGTATTCAAGATGATCCATT-CCTTGAGC
*** * * *
5225 TAATTTTTTGAACATTCCATGCTCCGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
129 T-ATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * *
5290 AAACAAGTTTTGGTCGCTGAATTAAAAACTTATTTACGTGAGATTTGGTTCTCTATTGGTTCTTG
193 AAACAAATTTTGGACG-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
5355 GACGAAC-TTCCAACCTTGTCAAAAACTTATTTACATGAGTATTGTTTCTGTCTTAGTTCTTGGA
257 GACGAACTTTCCAACC-TATCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGA
* *
5419 CGAACTTTCGAACTTGTC
321 CGAACTTCCAAACTTGTC
* * *
5437 AAAAACTTATTTTATGTTAGAATTATTTCTCTCTTGGTTTTTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTA-TTTACGTGAGAATTATTTCTCTCTTGGTTTTTGGACGAACATTTGAACTTGTCAA
* * * *
5502 ACTTTTATGATTTCTTTTCTAACTTCGGTTCTTGAAAGTATTCATGATGATCCATTCCTTCAAGC
65 ACTTTTACGATTTCTTTTATAACTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCCTT-GAGC
* *
5567 TATTTTCCAAACATTCCTTGCACGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-A
129 TATTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
5631 AA-AATATTTTGGACTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTG
194 AACAA-ATTTTGGAC-GTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
*
5695 GACGAGCTTT
257 GACGAACTTT
5705 TGAACTTGTC
Statistics
Matches: 518, Mismatches: 75, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
339 12 0.02
340 345 0.67
341 160 0.31
342 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.41
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTTTTGGACGAACATTTGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCCTTGAGCTA
TTTTCCAAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAATTTTGGACGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACTTTCCAACCTATCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC
TTCCAAACTTGTC
Found at i:5659 original size:556 final size:556
Alignment explanation
Indices: 5097--6273 Score: 1630
Period size: 556 Copynumber: 2.1 Consensus size: 556
5087 CAAACTTGTC
* * * * *
5097 AAAAACTTATTTACGTGAAAATTGATTCTCTCTTGGTTCTTGGATGAACATTTGAACTTTTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATTTGAACTTGTCAAA
* * * *
5162 CTTTTACGATTTCTTTTATAACTTCA-ATTCCTGAAAGTATTCAAGATGATCCATTCCCTTGAGT
66 CTTTCACGAGTTCTTTTATAACTT-AGATTCCTGAAAGCATTCAAGACGATCCATTCCCTTGAGT
* *** * * * *
5226 AATTTTTTGAACATTCCATGCTCCG-GAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
130 AAATTTCCAAACATTCCATGCT-CGAGAAATCACACAATTTGGTCAAAATAGTTTGTCATTTTGT
* * *
5290 AAACAAGTTTTGGTC-GCTGAATTAAAAACTTATTTACGTGAGATTTGGTTCTCTATTGGTTCTT
194 AAACAAGTTTTGATCTG-TGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTATTGGTTCTT
* * * *
5354 GGACGAACTTCC-AACCTTGTCAAAAACTTATTTACATGAGTATTGTTTCTGTCTTAGTTCTTGG
258 GGACAAACTTCCGAA-CTTATCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGG
* * * * *
5418 ACGAACTTTCGAACTTGTCAAAAACTTATTTTATGTTAGAATTATTTCTCTCTTGGTTTTTGGAC
322 ACGAACTTCCAAACTTGTCAAAAACTTA-TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAC
* * * * * *
5483 GAACATCTGAACTTGTCAAACTTTTATGATTTCTTTTCTAACTTCGGTTCTTGAAAGTATTCATG
386 GAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAG
* * *
5548 ATGATCCATTCCTTCAAGCTATTTTCCAAACATTCCTTGCACGGGAAATCGCATCATTTGGTCTA
451 AGGATCCATTCCTTCAAGCAATTTTCCAAACATTCCATGCACGGGAAATCGCATCATTTGGTCTA
**
5613 AATAGTTTGTCATTTTG-AAA-AATATTTTGGACTTTGAACT
516 AATAGTTTGTCATTTTGTAAATAA-ATTTTGGACGCTGAACT
* *
5653 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAGCTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATTTGAACTTGTCAAA
* *
5718 CTTTCACGAGTTCTTTTATAACTTAGATTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGTA
66 CTTTCACGAGTTCTTTTATAACTTAGATTCCTGAAAGCATTCAAGACGATCCATTCCCTTGAGTA
*
5783 AATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAGAAATCACACAATTTGGTCAAAATAGTTTGTCATTTTGTAA
* * * *
5848 ACAAGTTTTGATCTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
196 ACAAGTTTTGATCTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGA
* * *
5913 CAAACTTCCGAACTTATCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CAAACTTCCGAACTTATCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGA
* *
5978 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACA
326 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACA
* *
6043 TCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTTGGTTCCTAAAAGTATTCAAGAGGAT
391 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGAGGAT
** *** *
6108 CCATTCCTTTGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
456 CCATTCCTTCAAGCAATTTTCCAAACATTCCATGCACGGGAAATCGCATCATTTGGTCTAAATAG
* * * *
6173 TTTGTCTTTTTGTAAATAAGTTTTGGTCGCTGAATT
521 TTTGTCATTTTGTAAATAAATTTTGGACGCTGAACT
* *
6209 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCTTGGACAAAC-TTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATTT-GAACTTGTCAA
6273 A
65 A
6274 AACTTATTTT
Statistics
Matches: 545, Mismatches: 69, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
555 166 0.30
556 374 0.69
557 5 0.01
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (556 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATTTGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGATTCCTGAAAGCATTCAAGACGATCCATTCCCTTGAGTA
AATTTCCAAACATTCCATGCTCGAGAAATCACACAATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGATCTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGA
CAAACTTCCGAACTTATCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGA
ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACA
TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGAGGAT
CCATTCCTTCAAGCAATTTTCCAAACATTCCATGCACGGGAAATCGCATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAATAAATTTTGGACGCTGAACT
Found at i:5833 original size:215 final size:216
Alignment explanation
Indices: 5437--5933 Score: 592
Period size: 215 Copynumber: 2.3 Consensus size: 216
5427 CGAACTTGTC
* * * *
5437 AAAAACTTATTTTATGTTAGAATTATTTCTCTCTTGGTTTTTGGACGAACATCTGAACTTGTCAA
1 AAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAA
* * * * * * * * *
5502 ACTTTTATGATTTCTTTTCTAACTTCGGTTCTTGAAAGTATTCATGATGATCCATTCCTTCAAGC
65 ACTTTCACGAGTTCTTTTATAACTTAGATTCTTGAAAGCATTCAAGACGATCCATTCCTTCAAGC
* * * * * *
5567 TATTTTCCAAACATTCCTTGCACGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-A
130 TAATTTCCAAACATTCCATGCACGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTA
5631 AA-AATATTTTGGA-CT-TTGAACT
195 AACAA-ATTTT-GATCTGTT-AACT
* * * *
5653 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAGCTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
**
5718 CTTTCACGAGTTCTTTTATAACTTAGATTCCTT-AAAGCATTCAAGACGATCCATTCCTTTGAG-
66 CTTTCACGAGTTCTTTTATAACTTAGATT-CTTGAAAGCATTCAAGACGATCCATTCCTTCAAGC
*
5781 TAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGT
130 T-AATTTCCAAACATTCCATGCACGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGT
* *
5846 AAACAAGTTTTGATCTGTTAATT
194 AAACAAATTTTGATCTGTTAACT
* * * * * *
5869 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTATCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
5934 AATTTATTTA
Statistics
Matches: 239, Mismatches: 36, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
214 1 0.00
215 153 0.64
216 81 0.34
217 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGATTCTTGAAAGCATTCAAGACGATCCATTCCTTCAAGCT
AATTTCCAAACATTCCATGCACGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAATTTTGATCTGTTAACT
Found at i:5942 original size:896 final size:896
Alignment explanation
Indices: 4479--6336 Score: 2861
Period size: 896 Copynumber: 2.1 Consensus size: 896
4469 TCGTTGAATT
* **
4479 AAAAACTTATTTACGTGAGAATTGAATCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
4544 AACTTATTTACGTGAGTATTGTTTCTCTGTTTCTTCTTGGACGAACTTCCAAACTTGTCAAACTT
66 AACTTATTTACGTGAGAATTATTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
* *
4609 TTACGATTTATTTTATAACTTCGTTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATA
131 TTACGATTTATTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCAAGAAATA
* * * * *
4674 TTTCGAACATTCCATGCTCGAAAAATCTCATCATTTGGTCTAAATATTTTGTTATTTTGTAAACA
196 TTTCAAACATTCCATGCACGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * *
4739 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTTTCTCTCTCTTGTTTCTTGGACGA
261 AATTTTGGACTTTAAACTAAAAACTTATTTACGTGAGAATTTTCTCTCTCTTGTTTCTTGGACGA
* *
4804 ACTTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGAC
326 ACTTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGATTCCTTAAAGCATTCAAGAC
*
4869 GATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGTAATCACACCATTTGGTCAAAA
391 GATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAA
*
4934 TAGTTTGTCATTTTGTAAACAACTTTTGGACTGTCAATTAATAACTTAGTTATGTGAGAATTGTT
456 TAGTTTGTCATTTTGTAAACAACTTTTGGACTGTCAATTAATAACTTAGTTACGTGAGAATTGTT
* *
4999 TCTCTCCTGGTTCTTGGACGAACTTTCGAACCTATCAAAAATTTATTTACGTGAGAATTGTTTCT
521 TCTCTCCTGGTTCTTGGACAAACTTCCGAACCTATCAAAAATTTATTTACGTGAGAATTGTTTCT
5064 CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGATTCTCTC
586 CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGATTCTCTC
**
5129 TTGGTTCTTGGATGAACATTTGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTCAATTCCT
651 TTGGTTCTTGGATGAACATCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTCAATTCCT
* * *
5194 GAAAGTATTCAAGATGATCCATTCCCTTGAGTAATTTTTTGAACATTCCATGCTCCGGAAATCGC
716 AAAAGTATTCAAGAGGATCCATTCCCTTGAGCAATTTTTTGAACATTCCATGCTCCGGAAATCGC
5259 ATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCGCTGAATTAAAAACTTATT
781 ATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCGCTGAATTAAAAACTTATT
* *
5324 TACGTGAG-ATTTGGTTCTCTATTGGTTCTTGGACGAAC-TTCCAACCTTGTC
846 TACGTGAGTA-TTGGTTCTCTATTAGTTCTTGGACAAACTTTCCAA-CTTGTC
* * * *
5375 AAAAACTTATTTACATGAGTATTGTTTCTGTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * **
5440 AACTTATTTTATGTTAGAATTATTTCTCTCTTGGTTTTTGGACGAACATCTGAACTTGTCAAACT
66 AACTTA-TTTACGTGAGAATTATTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACT
* * * *** * * **
5505 TTTATGATTTCTTTTCTAACTTCGGTTCTTGAAAGTATTCATGATGATCCATTCCTTCAAGCTAT
130 TTTACGATTTATTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCAAGAAAT
* **
5570 -TTTCCAAACATTCCTTGCACGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG-AAA
195 ATTT-CAAACATTCCATGCACGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
5633 -AATATTTTGGACTTTGAACTAAAAACTTATTTACGTGAGAATTGTT-TCTCTCTTAG-TTCTTG
259 CAA-ATTTTGGACTTTAAACTAAAAACTTATTTACGTGAGAATT-TTCTCTCTCTT-GTTTCTTG
*
5695 GACGAGCTTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGATTCCTTAAAGCATTC
321 GACGAACTTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGATTCCTTAAAGCATTC
*
5760 AAGACGATCCATTCCTTTGAGTAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGT
386 AAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGT
* *
5825 CAAAATAGTTTGTCATTTTGTAAACAAGTTTT-GATCTGTTAATTAATAACTTAGTTACGTGAGA
451 CAAAATAGTTTGTCATTTTGTAAACAACTTTTGGA-CTGTCAATTAATAACTTAGTTACGTGAGA
* *
5889 ATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTATCAAAAATTTATTTACGTGAGAATT
515 ATTGTTTCTCTCCTGGTTCTTGGACAAACTTCCGAACCTATCAAAAATTTATTTACGTGAGAATT
* *
5954 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTT
580 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGAT
**
6019 TCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTTG
645 TCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTCA
* * *
6084 GTTCCTAAAAGTATTCAAGAGGATCCATTCCTTTGAGCAATTTTTTGAACATTCCATGCTCGGGA
710 ATTCCTAAAAGTATTCAAGAGGATCCATTCCCTTGAGCAATTTTTTGAACATTCCATGCTCCGGA
* *
6149 AATCGCATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAATAAGTTTTGGTCGCTGAATTAAAAA
775 AATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCGCTGAATTAAAAA
* * *
6214 CTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCTTGGACAAACTTTCGAACTTGTC
840 CTTATTTACGTGAGTATTGGTTCTCTATTAGTTCTTGGACAAACTTTCCAACTTGTC
* * * **
6271 AAAAACTTATTT-TATGTAAGAATTGTTTCTCTCTTGGTTTTTGGACGAACATCTAAACTTGTCA
1 AAAAACTTATTTACATG--AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
6335 AA
64 AA
6337 CTTTTATGAT
Statistics
Matches: 870, Mismatches: 82, Indels: 19
0.90 0.08 0.02
Matches are distributed among these distances:
895 7 0.01
896 666 0.77
897 197 0.23
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (896 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
AACTTATTTACGTGAGAATTATTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTACGATTTATTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCAAGAAATA
TTTCAAACATTCCATGCACGAAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
AATTTTGGACTTTAAACTAAAAACTTATTTACGTGAGAATTTTCTCTCTCTTGTTTCTTGGACGA
ACTTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGATTCCTTAAAGCATTCAAGAC
GATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAA
TAGTTTGTCATTTTGTAAACAACTTTTGGACTGTCAATTAATAACTTAGTTACGTGAGAATTGTT
TCTCTCCTGGTTCTTGGACAAACTTCCGAACCTATCAAAAATTTATTTACGTGAGAATTGTTTCT
CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGATTCTCTC
TTGGTTCTTGGATGAACATCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTCAATTCCT
AAAAGTATTCAAGAGGATCCATTCCCTTGAGCAATTTTTTGAACATTCCATGCTCCGGAAATCGC
ATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCGCTGAATTAAAAACTTATT
TACGTGAGTATTGGTTCTCTATTAGTTCTTGGACAAACTTTCCAACTTGTC
Found at i:5981 original size:62 final size:62
Alignment explanation
Indices: 5872--6057 Score: 300
Period size: 62 Copynumber: 3.0 Consensus size: 62
5862 GTTAATTAAT
* *
5872 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTATCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAA
* * *
5934 AATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAA
* * *
5996 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAA
6058 CTTTTACGAT
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 114 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAA
Found at i:6275 original size:340 final size:341
Alignment explanation
Indices: 5653--6336 Score: 994
Period size: 340 Copynumber: 2.0 Consensus size: 341
5643 ACTTTGAACT
* * **
5653 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAGCTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
5718 CTTTCACGAGTTCTTTTATAACTTAGATTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGTA
66 CTTTCACGAGTTCTTTTATAACTTAGATTCCTAAAAGCATTCAAGACGATCCATTCCTTTGAGCA
5783 AATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAA
* * *
5848 ACAAGTTTTGATCTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
196 ACAAGTTTTGATCTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
* *
5913 CAAACTTCCGAACTTATCAAAAATTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
261 CAAACTTCCGAACTTATCAAAAACTTATTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
5977 AACTTCCAAACTTGTC
326 AACATCCAAACTTGTC
* * *
5993 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
6058 CTTTTACGATTTCTTTTATAACTTTGGTTCCTAAAAGTATTCAAGAGGATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGATTCCTAAAAGCATTCAAGACGATCCATTCCTTTGAGCA
* *** * * * * *
6123 ATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCTTTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAA
* * * *
6188 ATAAGTTTTGGTC-GCTGAATTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCTTGG
196 ACAAGTTTTGATCTG-TGAATTAAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* * * *
6252 ACAAACTTTCGAACTTGTCAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTTTTGGAC
260 ACAAACTTCCGAACTTATCAAAAACTTATTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC
*
6317 GAACATCTAAACTTGTC
325 GAACATCCAAACTTGTC
6334 AAA
1 AAA
6337 CTTTTATGAT
Statistics
Matches: 303, Mismatches: 39, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
339 1 0.00
340 251 0.83
341 51 0.17
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (341 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGATTCCTAAAAGCATTCAAGACGATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGATCTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
CAAACTTCCGAACTTATCAAAAACTTATTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACATCCAAACTTGTC
Found at i:6330 original size:63 final size:62
Alignment explanation
Indices: 6209--6336 Score: 159
Period size: 63 Copynumber: 2.0 Consensus size: 62
6199 TCGCTGAATT
* * * *
6209 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCTTGGACAAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACTCTCAAACTTGTC
* * * *
6271 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTTTTGGACGAACATCT-AAACTTGTC
1 AAAAACTTA-TTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAAC-TCTCAAACTTGTC
6334 AAA
1 AAA
6337 CTTTTATGAT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
62 9 0.16
63 45 0.80
64 2 0.04
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACTCTCAAACTTGTC
Found at i:6439 original size:279 final size:278
Alignment explanation
Indices: 5931--6531 Score: 882
Period size: 279 Copynumber: 2.2 Consensus size: 278
5921 CGAACTTATC
* *
5931 AAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAA
* * * *
5996 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* *
6061 TTACGATTTCTTTTATAACTTTGGTTCCTAAAAGTATTCAAGAGGATCCATTCCTTTGAGCAATT
131 TTACGATTTCTTTTATAACTTTGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
*** * *
6126 TTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAATA
196 TTCCAAACATTCCATGCTCGGGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-A
* *
6191 A-GTTTTGGTCGCTGAATT
260 AGGATTTGGTCGCTCAATT
* * * *
6209 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAA
* * *
6274 AACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTTTTGGACGAACATCTAAACTTGTCAAACT
66 AACTTA-TTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACT
* * *
6339 TTTATGATTTCTTTTATAACTTTGGTTCCTTAAAGTATT-AATGACGATCCATTCCTTCGAGCTA
130 TTTACGATTTCTTTTATAACTTTGGTTCCTAAAAGTATTCAA-GACGATCCATTCCTTCGAGCAA
* *
6403 TTTTCCAAACATTCCTTGCTTGGGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
194 TTTTCCAAACATTCCATGCTCGGGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* **
6468 AAGGATTTGTTCTTTCAATT
259 AAGGATTTGGTCGCTCAATT
*
6488 AAAAACTTATTTACGTGAGAATTGTTTCTTTCTTGGTTCTTGGA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
6532 TGAACTTCTG
Statistics
Matches: 287, Mismatches: 33, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
278 69 0.24
279 218 0.76
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.42
Consensus pattern (278 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTTGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
TTCCAAACATTCCATGCTCGGGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAA
GGATTTGGTCGCTCAATT
Found at i:6671 original size:834 final size:826
Alignment explanation
Indices: 4210--6767 Score: 2658
Period size: 896 Copynumber: 3.0 Consensus size: 826
4200 AATAACTTAG
*
4210 TTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTA
* * *
4275 CGTGAGAATTGTTTCTCTCTTGGTCCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTC
66 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAACTTTTACGATTTC
* *
4340 TTTTATAACTTCAATTCTTGAAAGTATTCAAGATGATCCATT-CTTTCGAGCAATTTTTCGAACA
131 TTTTATAACTTCAATTCCTGAAAGTATTCAAGATGATCCATTCCTTT-GAGCAATTTTTTGAACA
** * * *
4404 TTCCATGCTCCGAAAAATTGCATAATTTGGTCTAGATAGTTTGTCTTTTTGTAAACAGGTTTTGG
195 TTCCATGCT-CGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGG
* * *
4469 TCGTTGAATTAAAAACTTATTTACGTGAGAATTGAATCTCTCTTGGTTCTTGGACGAACTTCCGA
259 TCGCTGAATTAAAAACTTATTTACGTGAG-ATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGA
* * ** *
4534 ACTTGTCAAAAACTTA-TTTACGTGAGTATTGTTTCTCTGTTTCTTCTTGGACGAACTTCCAAAC
323 ACTTGTCAAAAACTTATTTTATGT-AGTATTGTTTCTCTCTTAGTTCTTGGACGAAC-TCTAAAC
* * ** **
4598 TTGTCAAACTTTTACGATTTATTTTATAACTTCGTTTCCAAAAAGTATTCAA-GATAATCCATTC
386 TTGTCAAACTTTTATGATTTATTTTATAACTTTG-TTCCTTAAAGTATT-AATGACGATCCATTC
* ** * * * *
4662 CTTCTAGAAATATTT-CGAACATTCCATGCTCGAAAAATCTCATCATTTGGTCTAAATATTTTGT
449 CTTCAAGCTATATTTCCAAACATTCCTTGCTTG-GAAATCTCATCATTTGGTCTAAATATTTTGT
* * * *
4726 TATTTTGTAAACAA-GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTTTCTCTCTCT
513 CATTTTGTAAA-AAGGATTTGATCTTT-AATTAAAAACTTATTTACGTGAGAATTTT-TCTTTCT
* * * * * * * *
4790 TGTTTCTTGGACGAACTTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTT
575 TGATTCTTGGATGAACTTCTGAACTTTTCCAACTTTTACGAGTTCTTTTATAACTTTGGTACCTT
* * * * ** *
4855 AAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCG-AGTAATCAC
640 AAAGTATTCAAGATGATCCATTCCTTTGAG-AATTTTACGAACATTCCACACTCGTA-AAATCAC
* * * * *
4919 ACCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTGGACTGTCAATTAATAACTTAGT
703 ATC-TATGGTCAAAACAGTTTGTCATTTTGTAAACAAGTTTT-GACTGTTAATTAATAACTTAGT
* * * *
4984 TATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTTCGAACCTATCAAAAATTTAT
766 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAATTTAT
5045 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTA
* * **
5110 CGTGAAAATTGATTCTCTCTTGGTTCTTGGATGAACATTTGAACTTTTCAAACTTTTACGATTTC
66 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAACTTTTACGATTTC
* *
5175 TTTTATAACTTCAATTCCTGAAAGTATTCAAGATGATCCATTCCCTTGAGTAATTTTTTGAACAT
131 TTTTATAACTTCAATTCCTGAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTTGAACAT
*
5240 TCCATGCTCCGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTC
196 TCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTC
* * *
5305 GCTGAATTAAAAACTTATTTACGTGAGATTTGGTTCTCTATTGGTTCTTGGACGAAC-TTCCAAC
261 GCTGAATTAAAAACTTATTTACGTGAGA-TTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAA-
* * * *
5369 CTTGTCAAAAACTTATTTACATG-AGTATTGTTTCTGTCTTAGTTCTTGGACGAACTTTCGAACT
324 CTTGTCAAAAACTTATTT-TATGTAGTATTGTTTCTCTCTTAGTTCTTGGACGAACTCT-AAACT
*** * * ** * *
5433 TGTCAAAAACTTAT--TTTATGTTAGAA-TTAT-TTCTCTCT-TGGT-TT-TTGGACGA-ACATC
387 TGTCAAACTTTTATGATTTATTTTATAACTT-TGTTC-CT-TAAAGTATTAAT-GACGATCCAT-
* * * * * *
5490 TGAACTTGTCAAACTTTTATGATTTCTTTTCTAAC-TTCGGTT-CTTGAAAGTATTCATGATGAT
447 T---CCT-TCAAGC---TAT-ATTTC----CAAACATTC-CTTGCTTGGAA--A-TC----TCAT
* * * *
5553 CCATTCCTTCAAGCTATTTTCCAAACATTCCTTGCACGGGAAATCGCATCATTTGGTCTAAATAG
492 -CA-T--TT---G-----GTCTAAATATT--TT------G---T--CAT--TTT-G--TAAAAAG
* * *
5618 TTTGTCATTTTGAAAAATATTTTGGACTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTC
527 ---G--A-TTTG----AT-CTTT--------AATTAAAAACTTATTTACGTGAGAATT-TTTCTT
* * * * * * * * *
5683 TCTT-AGTTCTTGGACGAGCTTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGATT
572 TCTTGA-TTCTTGGATGAACTTCTGAACTTTTCCAACTTTTACGAGTTCTTTTATAACTTTGGTA
* * * * * **
5747 CCTTAAAGCATTCAAGACGATCCATTCCTTTGAGTAAATTTCCAAACATTCCATGCTCG-AGAAA
636 CCTTAAAGTATTCAAGATGATCCATTCCTTTGAG-AATTTTACGAACATTCCACACTCGTA-AAA
* * *
5811 TCACACCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTGTTAATTAATAACT
699 TCACATC-TATGGTCAAAACAGTTTGTCATTTTGTAAACAAGTTTTGA-CTGTTAATTAATAACT
*
5876 TAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTATCAAAAATTTAT
762 TAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAATTTAT
5941 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTA
6006 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAACTTTTACGATTTC
66 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAACTTTTACGATTTC
*** * *
6071 TTTTATAACTTTGGTTCCTAAAAGTATTCAAGAGGATCCATTCCTTTGAGCAATTTTTTGAACAT
131 TTTTATAACTTCAATTCCTGAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTTGAACAT
* *
6136 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAATAAGTTTTGGTC
196 TCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTC
* * *
6201 GCTGAATTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCTTGGACAAACTTTCGAAC
261 GCTGAATTAAAAACTTATTTACGTGAG-ATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAAC
* * *
6266 TTGTCAAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTTTTGGACGAACATCTAAACTT
325 TTGTCAAAAACTTATTTTATGT-AGTATTGTTTCTCTCTTAGTTCTTGGACGAAC-TCTAAACTT
*
6331 GTCAAACTTTTATGATTTCTTTTATAACTTTGGTTCCTTAAAGTATTAATGACGATCCATTCCTT
388 GTCAAACTTTTATGATTTATTTTATAACTTT-GTTCCTTAAAGTATTAATGACGATCCATTCCTT
* * *
6396 CGAGCTAT-TTTCCAAACATTCCTTGCTTGGGAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
452 CAAGCTATATTTCCAAACATTCCTTGCTT-GGAAATCTCATCATTTGGTCTAAATATTTTGTCAT
* *
6460 TTTGTAAAAAGGATTTGTTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTTTCTTTCTTGGT
516 TTTGTAAAAAGGATTTGATCTTT-AATTAAAAACTTATTTACGTGAGAATT-TTTCTTTCTTGAT
6525 TCTTGGATGAACTTCTGAACTTTTCCAACTTTTACGAGTTCTTTTATAACTTTGGTACCTTAAAG
579 TCTTGGATGAACTTCTGAACTTTTCCAACTTTTACGAGTTCTTTTATAACTTTGGTACCTTAAAG
* *
6590 TATTCAAGATGATCCATTCCTTTGAGAATTTTTCGAACATTCCACACTCGTAAAATCGCATCGTA
644 TATTCAAGATGATCCATTCCTTTGAGAATTTTACGAACATTCCACACTCGTAAAATCACATC-TA
* * * * *
6655 TGGTCTAAAA-AGTTTGTCATTTTGTAAACATGTTTTGGCTTTTGAATTAAAAACTTATTTACGT
708 TGGTC-AAAACAGTTTGTCATTTTGTAAACAAGTTTTGACTGTT-AATTAATAACTTAGTTACGT
* * * * *
6719 AAGAATTGTTTCTCTCTTGGCTCTTAGACGAACATCCGAACTTGTCAAA
771 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAA
6768 CTTTTGTGAT
Statistics
Matches: 1450, Mismatches: 167, Indels: 213
0.79 0.09 0.12
Matches are distributed among these distances:
829 3 0.00
830 9 0.01
831 5 0.00
832 10 0.01
833 12 0.01
834 282 0.19
835 311 0.21
836 5 0.00
837 2 0.00
838 4 0.00
841 3 0.00
842 9 0.01
843 7 0.00
844 2 0.00
847 4 0.00
848 4 0.00
849 2 0.00
850 2 0.00
852 2 0.00
853 6 0.00
855 2 0.00
856 3 0.00
858 3 0.00
860 9 0.01
862 2 0.00
863 1 0.00
868 1 0.00
869 2 0.00
871 8 0.01
873 2 0.00
875 3 0.00
876 2 0.00
877 1 0.00
878 4 0.00
879 2 0.00
881 2 0.00
882 2 0.00
883 2 0.00
884 4 0.00
887 2 0.00
888 8 0.01
889 9 0.01
890 3 0.00
892 4 0.00
894 3 0.00
895 5 0.00
896 586 0.40
897 55 0.04
898 4 0.00
899 11 0.01
900 6 0.00
901 11 0.01
902 4 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (826 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTTTCAAACTTTTACGATTTC
TTTTATAACTTCAATTCCTGAAAGTATTCAAGATGATCCATTCCTTTGAGCAATTTTTTGAACAT
TCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTC
GCTGAATTAAAAACTTATTTACGTGAGATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
TGTCAAAAACTTATTTTATGTAGTATTGTTTCTCTCTTAGTTCTTGGACGAACTCTAAACTTGTC
AAACTTTTATGATTTATTTTATAACTTTGTTCCTTAAAGTATTAATGACGATCCATTCCTTCAAG
CTATATTTCCAAACATTCCTTGCTTGGAAATCTCATCATTTGGTCTAAATATTTTGTCATTTTGT
AAAAAGGATTTGATCTTTAATTAAAAACTTATTTACGTGAGAATTTTTCTTTCTTGATTCTTGGA
TGAACTTCTGAACTTTTCCAACTTTTACGAGTTCTTTTATAACTTTGGTACCTTAAAGTATTCAA
GATGATCCATTCCTTTGAGAATTTTACGAACATTCCACACTCGTAAAATCACATCTATGGTCAAA
ACAGTTTGTCATTTTGTAAACAAGTTTTGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTT
TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAATTTAT
Found at i:7001 original size:217 final size:215
Alignment explanation
Indices: 6271--7149 Score: 948
Period size: 217 Copynumber: 4.1 Consensus size: 215
6261 CGAACTTGTC
* * * * *
6271 AAAAACTTATTTTATGTAAGAATTGTTTCTCTCTTGGTTTTTGGACGAACA-TCT-AAACTTGTC
1 AAAAACTTA-TTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGAC-AA-ATTTTCGAACTTGTC
* *
6334 AAACTTTTATGATTTCTTTTATAACTTTGGTTCCTTAAAGTATT-AATGACGATCCATTCCTTCG
63 AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTCG
* * * **
6398 AGCTATTTTCCAAACATTCCTTGCTTGGGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
127 AGCAATTTTCCAAACATTCCATGCTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * *
6463 GTAAA-AAGGATTTGTTCTTTCAATT
192 GTAAACAA-GTTTTGGT-TTTGAATT
* * * ** * * *
6488 AAAAACTTATTTACGTGAGAATTGTTTCTTTCTTGGTTCTTGGATGAA-CTTCTGAACTTTTCCA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAATTTTC-GAACTTGTCAA
* * *
6552 ACTTTTACGAGTTCTTTTATAACTTTGGTACCTTAAAGTATTCAAGATGATCCATTCCTTTGAG-
65 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC
* * ** ** * * * *
6616 AATTTTTCGAACATTCCACACTCGTAAAATCGCATCGTATGGTCTAAAAAGTTTGTCATTTTGTA
130 AATTTTCCAAACATTCCATGCTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
6681 AACATGTTTTGGCTTTTGAATT
195 AACAAGTTTTGG-TTTTGAATT
* * ** *
6703 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTAGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAATTTTCGAACTTGTCAAA
** * * * *
6768 CTTTTGTGATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCTATTCCTTCGAGCA
66 CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * * *
6833 ATTTTTCGAATATTCCATGCTTGGGAAATAGCATAATTTGGTCTAAATAGTTTGTCAGTTTGTAA
131 ATTTTCCAAACATTCCATGCTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
*
6898 ACAAGTTTTGGTGTTTGAAGTA
196 ACAAGTTTTGGT-TTTGAA-TT
* * * * * *
6920 AAAAACTTATTTACGTAAGAATTGTTCCTCTCTTCGTTCTT-GACCTATTTTTCGAACATGTGAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGA-CAAATTTTCGAACTTGTCAA
*
6984 ACTTTTACGAGTTCTTTTATAACTTCT-GTTTCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
65 ACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG
* * *
7048 CAATTTTCCAAACATTCCATGCTCGAGAAATCA-CATCATTTGGTCAAAATAGTTTATCATTTTG
129 CAATTTTCCAAACATTCCATGCTCGGGAAAT-AGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * *
7112 TAAACAAGTTTTGGACTGTAAATT
193 TAAACAAGTTTTGG-TTTTGAATT
7136 AAAAACTTAGTTTA
1 AAAAACTTA-TTTA
7150 TCATCTTGAA
Statistics
Matches: 555, Mismatches: 93, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
214 2 0.00
215 177 0.32
216 181 0.33
217 193 0.35
218 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (215 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAATTTTCGAACTTGTCAAA
CTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
ATTTTCCAAACATTCCATGCTCGGGAAATAGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGTTTTGAATT
Found at i:7989 original size:216 final size:216
Alignment explanation
Indices: 7284--9295 Score: 2061
Period size: 216 Copynumber: 9.4 Consensus size: 216
7274 GCTTGGGATA
** * *
7284 TTCGAAAAACAGCTCGAAGGAAAGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAGGAA
1 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAA
* * * * * * * **
7349 CGCATAGAAGTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGATAGAAACAATTTTTGCGTAA
66 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAA
* ** * *
7414 ACAAGTTTTT-ATTCAAAGACGTAATCTAGTTTACAAAATGGA-AAACTATTTAG-CCTAAATGA
131 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAT-GACAAACTATTTAGACC-AAATGA
* ** *
7476 TGCGTTTTCCCAAGTAGGGAATG
194 TGCGATTTCCTGAGTATGGAATG
* ** *
7499 TTCAAAAAATTGCTCGAAGGAATGGATTGTCTTGAATACTTTAAGGAA-CTGAAGTTATAAATGA
1 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGA
* * ** * * * * *
7563 ACTCATAAATGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAACAGAGAAATAACTGTCACGTA
65 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGT-
* * * *
7628 AAATAAGTTTTTAATTCAAATACCAAAA---GTTAACAAAATAACAAACTGTTTAGACCAAATGA
129 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* *
7690 TGCGATTT-CTCAAGCATGGAATG
194 TGCGATTTCCT-GAGTATGGAATG
* * ** * * *
7713 TTCGAAAAATTGCTCGAAGGAATGAATCATCTTGAATACTATAACAAACCAAAATTATAAAAGAA
1 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAA
* ** *
7778 CTCGTAAAAGTTTGACAAGTTTGGAAGTTCAT-CAAAAAATAATGAGAGAAAAAATTCTCACGTA
66 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAA-GAGAGAAACAATTCTCACGTA
* * * * *
7842 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAACAAACTATTTAGACTAGATGAA
130 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* *
7907 GTGATTTCCTGAGTATGAAATG
195 GCGATTTCCTGAGTATGGAATG
* * ** * *
7929 CTT-GGAAAACTGCTCGAAGGAGA-GGATTGTCTTGAATGCTTTAAGGAATCGAAGTTATAAAGG
1 -TTCGAAAAATTGCTCGAAGGA-ATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAG
* * * * * * * * * *
7992 AACTCGTAGAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGATAAAAATAATTCACGCGT
64 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGT
* * * * * * *
8057 AAACAAGTTTTAAATTCAAAGACCTAATCTAGTTTACAAAATGACACACTATTTTGACCAAATGA
129 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * *
8122 TGCGTTTTCCCGAGCATGGAATG
194 TGCGATTTCCTGAGTATGGAATG
* * * * *
8145 TTCGAAAAATTCCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCAAAGTTATAAAAGAA
1 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAA
* * * * * * *
8210 CTCATAAATGTTTGACAAGTTCGAAAGTTCGTCC-AAGACCGAA-AGAGAATCAACTCTCACGTA
66 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACC-AAGAGAGAAACAATTCTCACGTA
* * * * *
8273 AACAAGTTTTTAAGTCAAAGACCAAAA---GTTTAAAAAATGACAAACTGTTCAGACCAAATGAT
130 AATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
*
8335 GCGATTTCCCT-AGAATGGAATG
195 GCGATTT-CCTGAGTATGGAATG
* * * * * *
8357 TCCGAAAAGTTCCTCGAAGGAATGGATCATCTTGAATACTGTAATGAAACGAAGTTATAAAAGAA
1 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAA
* * *
8422 CTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAAAACCAAGAGAGGAACAATTCCCACGTAA
66 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAA
* * *
8487 ATAAG-TTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATG
131 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
**
8551 CGATTT-CTCGAGCGTGGAATG
196 CGATTTCCT-GAGTATGGAATG
*
8572 TTCGAAAAATTGCTCGATA-GAATGGATCATCTTGAATAGTTTAAGGAATCGAAGTTATAAAAGA
1 TTCGAAAAATTGCTCGA-AGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGA
** * * * * * * * *
8636 ACTCGTAAAAGTTTTTCAAGTTTGAAAGTTCATCCAAGATCTATGAGATAAACAATTC-CTATGT
65 ACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTC-ACGT
* * * * *
8700 AAATAAGTTTTTAATTCAAAGACCAAAACATGTATACAAAATAACAAACTATTTAGAACAATTGA
129 AAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * *
8765 TGAGATTT-CTCAAGTATGGACTG
194 TGCGATTTCCT-GAGTATGGAATG
* * *
8788 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTGAGGAA-C-TA-TAATAAAAGAA
1 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAA
* * *
8850 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCTAAACACCAAGAGAGAAACAATTTTCACGTAA
66 CTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAA
* * * * * *
8915 ATAAATTTTTAATTCAAAGACCAAATCCTGTTTACAAATTGACAAACAATTTTGACCAAATGATG
131 ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
*
8980 TGATTT-CTCGAGTATGGAAATG
196 CGATTTCCT-GAGTATGG-AATG
* * * *
9002 TTTGAAAAAAATT--TCGACGGAATGGATCATCTTGAATACTTTAAAGAATGGAAGTTATAAAAG
1 TTCG--AAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAG
* * * ** * *
9065 AACTCGTAGAAGTTTGACAACTTCAGAAGTTTGT-CAAAGAACCAAGAGAGAAATAGTTCTCACG
64 AACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAA-AACCAAGAGAGAAACAATTCTCACG
* * * * * *
9129 TAAATAATTTTTTAATTCAAAAACAAAAATTTGTTTACAAAATAACAAACTATTTAGTCCAAATG
128 TAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* *
9194 ATGCGGTTTCCT-AGTCATTGAATG
193 ATGCGATTTCCTGAGT-ATGGAATG
* * * * *
9218 TTAGGAAAATTGCTAGAAGAAATGGATCGTCTTGAATACTTTAAGGAA-CTGAAGTTATAAAAGA
1 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATC-GAAGTTATAAAAGA
9282 ACTCGTAAAAGTTT
65 ACTCGTAAAAGTTT
9296 TAC
Statistics
Matches: 1484, Mismatches: 270, Indels: 85
0.81 0.15 0.05
Matches are distributed among these distances:
212 152 0.10
213 196 0.13
214 187 0.13
215 311 0.21
216 491 0.33
217 145 0.10
218 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (216 bp):
TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAA
CTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAA
ATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG
CGATTTCCTGAGTATGGAATG
Found at i:9171 original size:430 final size:426
Alignment explanation
Indices: 7296--9295 Score: 2071
Period size: 430 Copynumber: 4.7 Consensus size: 426
7286 CGAAAAACAG
* * * * *
7296 CTCGAAGGAAAGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAGGAACGCATAGAAGTT
1 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTT
* * * ** *
7361 TGACAAGTTTGGAAGTTCGTCCAAA-AACCAAGATAGAAACAATTTTTGCGTAAACAAGTTTTT-
66 TGACAAGTTCGGAAGTTCGT-CAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
** * * *
7424 ATTCAAAGA-CGTAATCTAGTTTACAAAATGGA-AAACTATTTAGCCTAAATGATGCGTTTTCCC
130 ATTCAAAGACCAAAAT-TTGTTTACAAAAT-AACAAACTATTTAGCC-AAATGATGCGATTT-CC
* * *
7487 AAGTAGGGAATGTTCAAAAAATTGCTCGAAGGAATGGATTGTCTTGAATACTTTAAGGAACTGAA
191 AAGTATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT--A
* * * * *
7552 GTTATAAATGAACTCATAAATGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAACAGAGAAATA
254 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACA
* * * * * * * *
7617 ACTGTCACGTAAAATAAGTTTTTAATTCAAATACCAAA--AGTTAACAAAATAACAAACTGTTTA
319 ATTCTCACGT-AAATAAATTTTTAATTCAAAGACCAAATCTGTTTACAAAATGACAAACTATTTA
*
7680 GACCAAATGATGCGATTTCTCAAGCATGGAATGTTCGAAAAATT
383 GACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATT
* * ** * * *
7724 GCTCGAAGGAATGAATCATCTTGAATACTATAACAAACCAAAATTATAAAAGAACTCGTAAAAGT
1 -CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGT
* * ** *
7789 TTGACAAGTTTGGAAGTTCATCAAA-AAATAATGAGAGAAAAAATTCTCACGTAAATAAGTTTTT
65 TTGACAAGTTCGGAAGTTCGTCAAAGAACCAA-GAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * *
7853 AATTCAAAGACCAAAAGTTGTTTACAAAATAACAAACTATTTAGACTAGATGAAGTGATTTCCTG
129 AATTCAAAGACCAAAATTTGTTTACAAAATAACAAACTATTTAG-CCAAATGATGCGATTTCC-A
* * * * * *
7918 AGTATGAAATGCTT-GGAAAACTGCTCGAAGGAGA-GGATTGTCTTGAATGCTTTAAGGAATCGA
192 AGTATGGAATG-TTCGAAAAATTGCTCGAAGGA-ATGGATCGTCTTGAATACTTTAAGGAA-C-T
* * ** * * * *
7981 AGTTATAAAGGAACTCGTAGAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGATAAAAAT
253 AGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAAC
* * * * * * *
8046 AATTCACGCGTAAACAAGTTTTAAATTCAAAGACCTAATCTAGTTTACAAAATGACACACTATTT
318 AATTCTCACGTAAATAAATTTTTAATTCAAAGACCAAATCT-GTTTACAAAATGACAAACTATTT
* * *
8111 TGACCAAATGATGCGTTTTCCCGAGCATGGAATGTTCGAAAAATT
382 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATT
* * * * * *
8156 CCTCGAAGGAATGGATCGTCTTGAATACTTTCAGGAACCAAAGTTATAAAAGAACTCATAAATGT
1 -CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGT
* * * * *
8221 TTGACAAGTTCGAAAGTTCGTCCAAG-ACCGAA-AGAGAATCAACTCTCACGTAAACAAGTTTTT
65 TTGACAAGTTCGGAAGTTCGTCAAAGAACC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * *
8284 AAGTCAAAGACCAAAA---GTTTAAAAAATGACAAACTGTTCAGACCAAATGATGCGATTTCCCT
129 AATTCAAAGACCAAAATTTGTTTACAAAATAACAAACTATTTAG-CCAAATGATGCGATTT-CCA
* * * * * * * *
8346 AGAATGGAATGTCCGAAAAGTTCCTCGAAGGAATGGATCATCTTGAATACTGTAATGAAACGAAG
192 AGTATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAA-GGAAC-TAG
* * *
8411 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCATCCAAAAACCAAGAGAGGAACAA
255 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAA
* * *
8476 TTCCCACGTAAAT-AAGTTTTAATTTAAAGACCAAAAGT-TGTTTACAAAATGACAAACTATTTA
320 TTCTCACGTAAATAAATTTTTAATTCAAAGACC-AAA-TCTGTTTACAAAATGACAAACTATTTA
* *
8539 GACCAAAAGATGCGATTTCTCGAGCGTGGAATGTTCGAAAAATT
383 GACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATT
*
8583 GCTCGATA-GAATGGATCATCTTGAATAGTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAG
1 -CTCGA-AGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAG
** * * * * * * * * *
8647 TTTTTCAAGTTTGAAAGTTCATCCAAGATCTATGAGATAAACAATTC-CTATGTAAATAAGTTTT
64 TTTGACAAGTTCGGAAGTTCGTCAAAGAACCAAGAGAGAAACAATTCTC-ACGTAAATAAGTTTT
** * * * *
8711 TAATTCAAAGACCAAAACATGTATACAAAATAACAAACTATTTAGAACAATTGATGAGATTTCTC
128 TAATTCAAAGACCAAAATTTGTTTACAAAATAACAAACTATTTAG-CCAAATGATGCGATTTC-C
* * *
8776 AAGTATGGACTGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTGAGGAACTA-T
191 AAGTATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTAGT
* ** *
8840 AATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCTAA-ACACCAAGAGAGAAACAA
256 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATCCAAGA-ACCAAGAGAGAAACAA
* * * *
8904 TTTTCACGTAAATAAATTTTTAATTCAAAGACCAAATCCTGTTTACAAATTGACAAACAATTTTG
320 TTCTCACGTAAATAAATTTTTAATTCAAAGACCAAAT-CTGTTTACAAAATGACAAACTATTTAG
* * *
8969 ACCAAATGATGTGATTTCTCGAGTATGGAAATGTTTGAAAAAAATT
384 ACCAAATGATGCGATTTCTCGAGCATGG-AATGTTCG--AAAAATT
* * * *
9015 -TCGACGGAATGGATCATCTTGAATACTTTAAAGAATGGAAGTTATAAAAGAACTCGTAGAAGTT
1 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTT
* * * * * *
9079 TGACAACTTCAGAAGTTTGTCAAAGAACCAAGAGAGAAATAGTTCTCACGTAAATAATTTTTTAA
66 TGACAAGTTCGGAAGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * *
9144 TTCAAAAACAAAAATTTGTTTACAAAATAACAAACTATTTAGTCCAAATGATGCGGTTTCCTAGT
131 TTCAAAGACCAAAATTTGTTTACAAAATAACAAACTATTTAG-CCAAATGATGCGATTTCCAAGT
* * * * *
9209 CATTGAATGTTAGGAAAATTGCTAGAAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTT
195 -ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACT--AGTT
9274 ATAAAAGAACTCGTAAAAGTTT
257 ATAAAAGAACTCGTAAAAGTTT
9296 TAC
Statistics
Matches: 1299, Mismatches: 230, Indels: 80
0.81 0.14 0.05
Matches are distributed among these distances:
427 160 0.12
428 268 0.21
429 199 0.15
430 368 0.28
431 134 0.10
432 145 0.11
433 25 0.02
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (426 bp):
CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTT
TGACAAGTTCGGAAGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
TTCAAAGACCAAAATTTGTTTACAAAATAACAAACTATTTAGCCAAATGATGCGATTTCCAAGTA
TGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTAGTTATAA
AAGAACTCGTAAAAGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
CGTAAATAAATTTTTAATTCAAAGACCAAATCTGTTTACAAAATGACAAACTATTTAGACCAAAT
GATGCGATTTCTCGAGCATGGAATGTTCGAAAAATT
Done.