Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005917.1 Kokia drynarioides strain JFW-HI SEQ_120285, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2877
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34


Found at i:59 original size:41 final size:41

Alignment explanation


    Indices: 2--101  Score: 128
    Period size: 41  Copynumber: 2.4  Consensus size: 41

          1 T

                   *         *                *  *   
          2 AATGCTCAGACCTTTAGTGGTGCTTCCCCATAAATGCTGCC
          1 AATGCTCTGACCTTTAGCGGTGCTTCCCCATAAACGCCGCC

                  *                   **            *
         43 AATGCTTTGACCTTTAGCGGTGCTTCTTCATAAACGCCGCT
          1 AATGCTCTGACCTTTAGCGGTGCTTCCCCATAAACGCCGCC

                              
         84 AATGCTCTGACCTTTAGC
          1 AATGCTCTGACCTTTAGC

        102 TACTCTTTCT


Statistics
Matches: 50,  Mismatches: 9, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  41   50  1.00

ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32


Consensus pattern (41 bp):   
AATGCTCTGACCTTTAGCGGTGCTTCCCCATAAACGCCGCC
Done.