Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005918.1 Kokia drynarioides strain JFW-HI SEQ_120287, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4205
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33


Found at i:3783 original size:24 final size:24

Alignment explanation


    Indices: 3755--3803  Score: 89
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       3745 AATATACCAG

                           *        
       3755 TAACAACATCAAGCGTGGTAGCAT
          1 TAACAACATCAAGCGCGGTAGCAT

                                    
       3779 TAACAACATCAAGCGCGGTAGCAT
          1 TAACAACATCAAGCGCGGTAGCAT

             
       3803 T
          1 T

       3804 CTCTCTTACT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20


Consensus pattern (24 bp):   
TAACAACATCAAGCGCGGTAGCAT
Done.