Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005923.1 Kokia drynarioides strain JFW-HI SEQ_120297, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9164
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.32


Found at i:7206 original size:12 final size:12

Alignment explanation


    Indices: 7191--7240  Score: 57
    Period size: 12  Copynumber: 4.2  Consensus size: 12

       7181 GGAGGTGACC

                      * 
       7191 AAGAGAAGGATG
          1 AAGAGAAGGAAG

                *  *    
       7203 AAGAAAAAGAAG
          1 AAGAGAAGGAAG

                         
       7215 AAG-GAAAGGAAG
          1 AAGAG-AAGGAAG

                        
       7227 AAGAGAAGGAAG
          1 AAGAGAAGGAAG

              
       7239 AA
          1 AA

       7241 ACTGAACCTG


Statistics
Matches: 31,  Mismatches: 5, Indels: 4
        0.77            0.12        0.10

Matches are distributed among these distances:
  12   30  0.97
  13    1  0.03

ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02


Consensus pattern (12 bp):   
AAGAGAAGGAAG
Done.