Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005928.1 Kokia drynarioides strain JFW-HI SEQ_120305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175765

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4929--4961
17
2.0
17
88
5
50
39
6
3
51
1.42
10410--10477
20
3.6
19
76
15
70
61
8
0
29
1.26
13366--13402
2
18.5
2
94
0
65
54
45
0
0
1.00
15381--15439
31
1.9
31
86
6
84
35
10
11
42
1.76
17167--17365
102
2.0
102
91
2
328
24
18
22
35
1.96
20291--20336
17
2.6
18
93
3
76
10
0
15
73
1.08
20344--20391
23
2.2
23
88
7
73
10
4
14
70
1.29
20350--20450
23
4.4
24
76
6
75
10
4
12
71
1.29
22222--22306
20
4.2
20
84
0
116
10
20
27
42
1.84
23585--23633
25
2.0
24
88
4
71
32
2
4
61
1.26
26953--26977
13
1.9
13
100
0
50
36
0
16
48
1.46
32135--32180
20
2.3
20
80
0
56
63
6
2
28
1.31
32846--32895
19
2.6
19
80
3
55
36
6
0
58
1.23
32929--33028
29
3.4
30
67
14
75
33
2
5
60
1.30
34567--34592
2
13.0
2
100
0
52
50
0
0
50
1.00
36545--36625
30
2.8
28
73
14
76
27
4
8
59
1.48
37754--37821
34
1.9
36
82
11
88
58
7
4
29
1.45
47404--47428
6
4.2
6
100
0
50
16
0
0
84
0.63
48071--48362
89
3.3
89
89
4
423
36
18
9
34
1.84
48426--48571
10
15.4
9
66
14
55
63
0
4
30
1.20
48447--48490
21
2.2
20
83
4
52
54
2
0
43
1.12
48441--48513
28
2.5
29
73
10
69
57
1
2
38
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48501--48544
19
2.3
19
84
4
52
70
0
6
22
1.11
48500--48616
59
2.0
59
81
6
139
64
0
8
27
1.23
48531--48572
19
2.3
18
84
15
59
66
0
7
26
1.17
48811--48862
9
5.4
9
78
13
59
34
0
1
63
1.06
48811--48910
10
9.6
10
70
14
69
30
2
1
67
1.09
48811--48863
19
2.7
19
85
2
70
33
0
1
64
1.05
48832--48910
19
3.8
19
71
26
61
26
2
0
70
0.99
63249--63274
2
13.0
2
100
0
52
50
0
0
50
1.00
69489--69522
6
5.7
6
96
0
59
55
0
11
32
1.36
71478--71520
22
2.0
22
86
9
61
39
4
2
53
1.34
76463--76625
54
3.0
54
95
0
290
47
7
12
31
1.69
77315--77390
29
2.7
29
81
6
84
31
3
3
60
1.33
77384--77486
45
2.3
45
79
17
117
30
3
1
64
1.23
77404--77482
37
2.2
37
82
8
92
30
2
1
65
1.13
93895--93923
14
2.0
15
93
6
51
41
0
0
58
0.98
95461--95503
18
2.4
19
80
11
54
53
0
2
44
1.13
95640--95715
29
2.6
29
93
0
125
48
11
13
26
1.76
104088--104211
62
2.0
62
98
0
239
39
9
16
33
1.82
110607--110678
30
2.4
30
83
4
92
22
19
31
26
1.97
111281--111326
19
2.4
19
82
13
51
54
0
2
43
1.12
120984--121011
6
4.7
6
100
0
56
35
35
14
14
1.86
124951--124995
20
2.2
20
92
0
72
37
0
0
62
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124951--125003
17
2.9
17
83
8
52
37
0
0
62
0.96
124938--125018
28
2.9
28
76
10
78
34
0
1
64
1.02
125213--125255
18
2.4
18
80
0
50
25
9
6
58
1.54
135997--136051
26
2.1
26
86
0
74
52
1
1
43
1.22
141736--141760
2
12.5
2
100
0
50
52
0
0
48
1.00
143569--143599
2
15.5
2
93
0
53
48
0
0
51
1.00
143685--143732
24
1.9
25
87
8
71
68
2
4
25
1.18
155179--155207
6
4.8
6
100
0
58
51
0
34
13
1.42
162656--162710
16
3.8
16
72
22
66
30
3
3
61
1.30
162637--162708
27
2.7
27
91
2
119
30
2
4
62
1.28
168002--168048
24
2.0
24
87
8
69
34
2
2
61
1.20

Tables:   1

The End!