Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000593.1 Kokia drynarioides strain JFW-HI SEQ_111526, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 823

Length: 1373
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34


Found at i:693 original size:17 final size:17

Alignment explanation


    Indices: 671--704  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        661 GGGTTCTGCA

                             
        671 GGGACCATTGCCAGACG
          1 GGGACCATTGCCAGACG

                             
        688 GGGACCATTGCCAGACG
          1 GGGACCATTGCCAGACG

        705 AATAACAGAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.24, C:0.29, G:0.35, T:0.12


Consensus pattern (17 bp):   
GGGACCATTGCCAGACG

Found at i:1134 original size:19 final size:19

Alignment explanation


    Indices: 1112--1161  Score: 57
    Period size: 19  Copynumber: 2.6  Consensus size: 19

       1102 AACAAAAAAA

                                
       1112 TATAAAAAGATTA-AATTTT
          1 TATAAAAA-ATTATAATTTT

                  *             
       1131 TATAAGGAAATTATAATTTT
          1 TATAA-AAAATTATAATTTT

              *        
       1151 TAAAAAAAATT
          1 TATAAAAAATT

       1162 CAAATAATAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  19   14  0.54
  20   12  0.46

ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40


Consensus pattern (19 bp):   
TATAAAAAATTATAATTTT
Done.