genome.fa.s5933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005933.1 Kokia drynarioides strain JFW-HI SEQ_120314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141447

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--67	17	3.9	16	78	11	69	50	6	3	40	1.43
485--1275	206	3.9	206	91	2	1182	21	20	21	36	1.95
1781--1840	27	2.2	27	93	3	102	58	8	15	18	1.61
12542--12614	28	2.5	27	76	17	67	39	5	26	28	1.78
12667--12733	29	2.3	31	76	10	77	28	7	29	34	1.85
12686--13087	59	6.8	59	82	2	432	33	4	29	32	1.77
12684--13087	176	2.3	177	86	4	548	32	4	29	32	1.78
14088--14187	21	4.8	21	71	14	73	41	4	2	53	1.31
14962--15015	16	3.2	16	80	19	65	44	3	0	51	1.19
14963--15054	17	5.4	16	77	14	80	48	5	2	43	1.38
14962--15054	35	2.7	33	81	15	93	48	5	2	44	1.37
15669--15736	29	2.4	28	90	7	109	44	8	2	44	1.50
15808--15832	13	1.9	13	100	0	50	56	12	8	24	1.62
16646--16670	13	1.9	13	100	0	50	16	0	12	72	1.13
24673--24699	7	3.9	7	100	0	54	44	29	14	11	1.80
28362--28400	15	2.5	16	83	4	53	64	0	10	25	1.25
34512--34536	3	8.3	3	100	0	50	68	0	0	32	0.90
43713--43738	7	3.7	7	100	0	52	30	30	15	23	1.95
52543--52619	30	2.5	31	73	10	77	44	10	14	31	1.79
60631--60669	21	1.9	21	89	5	62	48	2	2	46	1.29
60677--60717	18	2.3	18	88	12	59	43	9	2	43	1.50
66917--66972	26	2.2	26	93	0	94	28	17	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71016--71153	31	4.5	31	72	13	117	50	10	13	26	1.72
70970--71153	90	2.0	90	82	6	221	50	11	14	24	1.75
83355--83385	7	4.6	7	96	4	55	83	0	0	16	0.64
85072--85155	17	5.1	16	84	4	69	44	0	4	51	1.22
85087--85155	17	4.1	17	86	1	95	44	0	2	52	1.16
85092--85142	6	8.8	6	77	16	54	41	0	3	54	1.19
85072--85155	34	2.5	33	82	3	107	44	0	4	51	1.22
85149--85203	25	2.2	25	93	0	92	58	16	5	20	1.58
85149--85222	13	5.6	14	69	18	52	55	18	6	18	1.64
85197--85231	15	2.3	15	90	0	52	42	31	8	17	1.79
86977--87411	58	7.4	60	87	6	576	31	31	5	30	1.81
86981--87404	29	14.5	31	76	14	354	32	31	5	30	1.80
86977--87403	117	3.7	116	86	7	573	32	31	5	31	1.80
88438--88494	13	4.2	13	77	18	55	31	1	7	59	1.34
89527--89604	17	4.6	16	78	10	75	50	3	2	43	1.34
89527--89604	34	2.3	34	84	2	93	50	3	2	43	1.34
93978--94002	2	12.5	2	100	0	50	52	0	48	0	1.00
100982--101041	6	10.3	6	74	13	54	40	0	1	58	1.08
100982--101057	17	4.4	17	91	3	116	40	2	1	55	1.22
100982--101057	35	2.2	35	90	4	118	40	2	1	55	1.22
100980--101020	11	4.1	11	76	23	54	41	0	0	58	0.98
100995--101069	34	2.2	34	78	4	80	45	2	2	49	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101803--101870	3	22.0	3	86	5	82	61	0	1	36	1.05
102981--103187	58	3.5	60	80	5	199	34	28	3	33	1.75
102981--103187	29	7.0	29	74	9	168	34	28	3	33	1.75
103133--103231	28	3.5	27	72	14	83	33	26	8	32	1.85
103100--103257	57	2.8	57	85	0	199	34	27	5	31	1.80
108213--108386	88	2.0	88	91	0	285	29	14	28	27	1.96
114393--115156	205	3.7	204	87	1	1001	37	19	20	22	1.95
115596--115688	17	5.3	18	82	10	113	40	2	3	53	1.29
115628--115672	6	7.8	6	80	9	58	44	0	2	53	1.13
115596--115688	35	2.7	34	86	6	116	40	2	3	53	1.29
115631--115686	11	4.9	11	78	10	51	39	3	1	55	1.28
116434--116492	3	19.0	3	84	6	64	59	0	1	38	1.08
116432--116492	25	2.4	25	80	0	77	59	0	1	39	1.08
117636--117717	31	2.7	31	88	1	112	36	21	4	36	1.75
117605--117758	30	5.2	30	77	6	116	36	26	5	31	1.79
119427--119472	23	2.0	23	83	8	58	39	10	17	32	1.84
126833--126867	18	1.9	18	88	11	54	62	2	2	31	1.24
130585--130656	21	3.3	21	74	16	74	69	19	2	8	1.27
130584--130668	23	3.8	22	74	13	75	70	17	2	9	1.24
130619--130693	35	2.2	35	82	2	98	69	17	5	8	1.32
131181--131260	36	2.2	36	80	8	92	36	2	1	60	1.18
131423--131464	22	1.9	22	90	0	66	21	7	7	64	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131601--131643	20	2.0	22	86	8	63	25	2	4	67	1.22
132534--132607	36	2.1	36	100	0	148	36	16	21	25	1.94
137353--137396	18	2.4	19	84	3	54	38	0	9	52	1.33
137910--137942	12	2.8	12	90	4	50	72	0	0	27	0.85
141228--141445	42	5.3	42	68	11	144	29	41	11	17	1.84

Tables:   1

The End!