Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005949.1 Kokia drynarioides strain JFW-HI SEQ_120338, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60265
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:2379 original size:32 final size:32
Alignment explanation
Indices: 2343--2404 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
2333 TATATTGATA
* *
2343 TAATTTTATGATAATATCTATTTATATTTTTT
1 TAATTTTATGATAATATATATATATATTTTTT
*
2375 TAATTTTTTGATAATATATATATATATTTT
1 TAATTTTATGATAATATATATATATATTTT
2405 ATTCAAACAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (32 bp):
TAATTTTATGATAATATATATATATATTTTTT
Found at i:4862 original size:17 final size:17
Alignment explanation
Indices: 4840--4873 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4830 AGGCTGATAC
4840 TTAAATTGAGTTTCTTT
1 TTAAATTGAGTTTCTTT
* *
4857 TTAAATTTATTTTCTTT
1 TTAAATTGAGTTTCTTT
4874 AAATTCTTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (17 bp):
TTAAATTGAGTTTCTTT
Found at i:8425 original size:18 final size:18
Alignment explanation
Indices: 8381--8443 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
8371 TAACAAAACT
* *
8381 CATAAAATAAGTAGTGCA
1 CATAAAATAAGTAATTCA
* *
8399 CCTATAATAAGTAATTCA
1 CATAAAATAAGTAATTCA
*
8417 CATAAAATAAG-CATATCA
1 CATAAAATAAGTAAT-TCA
8435 CATAAAATA
1 CATAAAATA
8444 TCAATTCACA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
17 2 0.05
18 35 0.95
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.25
Consensus pattern (18 bp):
CATAAAATAAGTAATTCA
Found at i:8458 original size:18 final size:18
Alignment explanation
Indices: 8381--8454 Score: 62
Period size: 18 Copynumber: 4.2 Consensus size: 18
8371 TAACAAAACT
* * *
8381 CATAAAATAAGTAGTGCA
1 CATAAAATAAGCAATTCA
* * *
8399 CCTATAATAAGTAATTCA
1 CATAAAATAAGCAATTCA
8417 CATAAAATAAGC-ATATCA
1 CATAAAATAAGCAAT-TCA
*
8435 CATAAAAT-ATCAATTCA
1 CATAAAATAAGCAATTCA
8452 CAT
1 CAT
8455 TAAACATTAG
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
17 10 0.22
18 36 0.78
ACGTcount: A:0.50, C:0.16, G:0.07, T:0.27
Consensus pattern (18 bp):
CATAAAATAAGCAATTCA
Found at i:16197 original size:298 final size:297
Alignment explanation
Indices: 15621--16813 Score: 2032
Period size: 298 Copynumber: 4.0 Consensus size: 297
15611 GAAAGGAAGA
*
15621 AGGACAACCACCATAAGAAGAAAAGGACATTCACGATCAATCGGGTAACTTCTTTCCTTATTACT
1 AGGACAACCACCATAAGAAGAAAAGGACATTCACGATCAATCGGGTAACTTCTTTCCTTAATACT
*
15686 TTTTGGGCTACACGTTAAGGACAATGTGTTTTCTAAAGTGTGGGAGGATAACATAGGAATTTTCG
66 TTTTGGGCTACACGTTAAGGACAATGTGTTTTCTAAAGTGTGGG-GGATAACATAGGAATTTTTG
15751 GCATATAG-TTTT-TTTTTATTTTGACTTTTTGATGTGTGCTTGAGCTTGTAGAAATACAAGTGA
130 GCATATAGTTTTTATTTTTATTTTGACTTTTTGATGTGTGCTTGAGCTTGTAGAAATACAAGTGA
*
15814 TTGATTAGGAGCATGTATAATAGGTTGATTGTGTTTTCTTGATAATCTTGGCATGATGATAAGGA
195 TTGGTTAGGAGCATGTATAATAGGTTGATTGTGTTTTCTTGATAATCTTGGCATGATGATAAGGA
*
15879 ATTTTACAGTTTTGAGCATGAAATTTTTGAAGTTCTAT
260 ATTTTACATTTTTGAGCATGAAATTTTTGAAGTTCTAT
* * * *
15917 AAGACAACCACAATAAGAAGAAAAGGACATTCACAATCAACCGGGTAACTTCTTTCCTTAATACT
1 AGGACAACCACCATAAGAAGAAAAGGACATTCACGATCAATCGGGTAACTTCTTTCCTTAATACT
* *
15982 TTTTGGGCTACACGTTAAGGACAATATGTTTTCTAAAGTGTAGGGGGATAACATAGGAATTTTTA
66 TTTTGGGCTACACGTTAAGGACAATGTGTTTTCTAAAGTGT-GGGGGATAACATAGGAATTTTTG
16047 GCATATAGTTTTTATTTTTATTTTGACTTTTTGATGTGTGCTTGAGCTTGTAGAAATACAAGTGA
130 GCATATAGTTTTTATTTTTATTTTGACTTTTTGATGTGTGCTTGAGCTTGTAGAAATACAAGTGA
16112 TTGGTTAGGAGCATGTATAATAGGTTGATTGTGTTTTCTTGATAATCTTGGCATGATGATAAGGA
195 TTGGTTAGGAGCATGTATAATAGGTTGATTGTGTTTTCTTGATAATCTTGGCATGATGATAAGGA
*
16177 ATTTTACATTTTTAAGCATGAAATTTTTGAAGTTCTAT
260 ATTTTACATTTTTGAGCATGAAATTTTTGAAGTTCTAT
16215 AGGACAACCACCATAAGAAGAAAAGGACATTCACGATCAATCGGGTAACTTCTTTCCTTAATACT
1 AGGACAACCACCATAAGAAGAAAAGGACATTCACGATCAATCGGGTAACTTCTTTCCTTAATACT
*
16280 TTTTGGGCTACACGTTAAGGACAATGTGTTTTCTAAAGTGTGGGGGGTTAACATAGGAATTTTTG
66 TTTTGGGCTACACGTTAAGGACAATGTGTTTTCTAAAGTGT-GGGGGATAACATAGGAATTTTTG
* *
16345 GCATATAGTTTTTATTTTTGTTTTCACTTTTTGATGTGTGCTTGAGCTTGTAGAAATACAAGTGA
130 GCATATAGTTTTTATTTTTATTTTGACTTTTTGATGTGTGCTTGAGCTTGTAGAAATACAAGTGA
* * *
16410 TTGGTTAGGAGCATGTATAATAAGTTGATTGTGTTTTCTTGATAATCTTGGCATGATGACAAGGT
195 TTGGTTAGGAGCATGTATAATAGGTTGATTGTGTTTTCTTGATAATCTTGGCATGATGATAAGGA
* *
16475 ATTTTACATTTTTTAGCATGAAATTTTTGAAGTTCGAT
260 ATTTTACATTTTTGAGCATGAAATTTTTGAAGTTCTAT
*
16513 AGGACAACCACCATAAGAAGAAAAGGACATTCACGATTAATCGGGTAACTTCTTTCCTTAATACT
1 AGGACAACCACCATAAGAAGAAAAGGACATTCACGATCAATCGGGTAACTTCTTTCCTTAATACT
* * * * *
16578 TTTTGGGCTACACATTAAGGACAATGTGTTTTTTAAAGTGCCGGAGGATAATATAGGAATTTTTG
66 TTTTGGGCTACACGTTAAGGACAATGTGTTTTCTAAAGTG-TGGGGGATAACATAGGAATTTTTG
*
16643 GCATATAGTTTTTATTTTTATTTTGACTTTTTGATGTGTGCTTGAGTTTGTAGAAATACAAGTGA
130 GCATATAGTTTTTATTTTTATTTTGACTTTTTGATGTGTGCTTGAGCTTGTAGAAATACAAGTGA
* * * * *
16708 TTGGTTAGGAGCAAGTATAGA-AGGTTAATTGTGTTTTCTTGATAAACTTGACATGATGATGAGG
195 TTGGTTAGGAGCATGTATA-ATAGGTTGATTGTGTTTTCTTGATAATCTTGGCATGATGATAAGG
*
16772 AATTTTATATTTTTGAGCATGAAATTTTTGAAGTTCTAT
259 AATTTTACATTTTTGAGCATGAAATTTTTGAAGTTCTAT
16811 AGG
1 AGG
16814 TTACATTATG
Statistics
Matches: 845, Mismatches: 47, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
296 126 0.15
297 7 0.01
298 711 0.84
299 1 0.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (297 bp):
AGGACAACCACCATAAGAAGAAAAGGACATTCACGATCAATCGGGTAACTTCTTTCCTTAATACT
TTTTGGGCTACACGTTAAGGACAATGTGTTTTCTAAAGTGTGGGGGATAACATAGGAATTTTTGG
CATATAGTTTTTATTTTTATTTTGACTTTTTGATGTGTGCTTGAGCTTGTAGAAATACAAGTGAT
TGGTTAGGAGCATGTATAATAGGTTGATTGTGTTTTCTTGATAATCTTGGCATGATGATAAGGAA
TTTTACATTTTTGAGCATGAAATTTTTGAAGTTCTAT
Found at i:19081 original size:12 final size:12
Alignment explanation
Indices: 19064--19098 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
19054 AAACTTTTGC
*
19064 TTTTATTTTCTA
1 TTTTATTTTATA
*
19076 TTTTATTTTATC
1 TTTTATTTTATA
19088 TTTTATTTTAT
1 TTTTATTTTAT
19099 GCTCTAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTATTTTATA
Found at i:19086 original size:17 final size:17
Alignment explanation
Indices: 19064--19098 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
19054 AAACTTTTGC
19064 TTTTAT-TTTCTATTTTA
1 TTTTATCTTT-TATTTTA
19081 TTTTATCTTTTATTTTA
1 TTTTATCTTTTATTTTA
19098 T
1 T
19099 GCTCTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTATCTTTTATTTTA
Found at i:19405 original size:31 final size:32
Alignment explanation
Indices: 19348--19417 Score: 99
Period size: 31 Copynumber: 2.2 Consensus size: 32
19338 TCATATATGC
* *
19348 ATATATATAATCAAGACCTACGCATATATATT
1 ATATATATAATCAAAACCTACACATATATATT
19380 ATATATATAA-CAAAA-CTCACACATATATATT
1 ATATATATAATCAAAACCT-ACACATATATATT
19411 ATATATA
1 ATATATA
19418 CACATACCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
30 2 0.06
31 23 0.66
32 10 0.29
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.34
Consensus pattern (32 bp):
ATATATATAATCAAAACCTACACATATATATT
Found at i:23396 original size:26 final size:26
Alignment explanation
Indices: 23359--23436 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 26
23349 TACGAACCAA
*
23359 TTCAGCACATCG-TACTTTCGAGCCAG
1 TTCAGCATATCGCT-CTTTCGAGCCAG
*
23385 TTCAGCATATCGCTCTTTCTAGCCAG
1 TTCAGCATATCGCTCTTTCGAGCCAG
* ** *
23411 TTCAGTATATTTCTCTTACGAGCCAG
1 TTCAGCATATCGCTCTTTCGAGCCAG
23437 ATGACATATC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 43 0.98
27 1 0.02
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (26 bp):
TTCAGCATATCGCTCTTTCGAGCCAG
Found at i:23653 original size:24 final size:24
Alignment explanation
Indices: 23567--23666 Score: 101
Period size: 24 Copynumber: 4.2 Consensus size: 24
23557 TGCAAGTTTA
* ** * *
23567 GTACGTTTACGCTCACCAGCTAAT
1 GTACGTTTATGCTCGTCAGCCACT
* * *
23591 GTAAGTTTATGCTCTTCAGCTACT
1 GTACGTTTATGCTCGTCAGCCACT
*
23615 ATACGTTTATGCTCGTCAGCCACT
1 GTACGTTTATGCTCGTCAGCCACT
* *
23639 GTACGTTTATGCTCGTTAACCACT
1 GTACGTTTATGCTCGTCAGCCACT
23663 GTAC
1 GTAC
23667 ATTTGATACT
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 64 1.00
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (24 bp):
GTACGTTTATGCTCGTCAGCCACT
Found at i:24824 original size:71 final size:71
Alignment explanation
Indices: 24742--24882 Score: 273
Period size: 71 Copynumber: 2.0 Consensus size: 71
24732 ATTTTAATAA
*
24742 ATACTAATGACCTCGTAAATATTAAATAATTAATATTTACAGTCTAACACATCGAAGTTGTGGCT
1 ATACTAATGACCTCGTAAATATTAAATAATTAATATTTACAATCTAACACATCGAAGTTGTGGCT
24807 TCAAAC
66 TCAAAC
24813 ATACTAATGACCTCGTAAATATTAAATAATTAATATTTACAATCTAACACATCGAAGTTGTGGCT
1 ATACTAATGACCTCGTAAATATTAAATAATTAATATTTACAATCTAACACATCGAAGTTGTGGCT
24878 TCAAA
66 TCAAA
24883 ATCACCAATT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (71 bp):
ATACTAATGACCTCGTAAATATTAAATAATTAATATTTACAATCTAACACATCGAAGTTGTGGCT
TCAAAC
Found at i:25967 original size:18 final size:18
Alignment explanation
Indices: 25944--25983 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
25934 ACGATTTTTA
* *
25944 TTTTATTTTTTGTTTATT
1 TTTTATCTTTTCTTTATT
25962 TTTTATCTTTTCTTTATT
1 TTTTATCTTTTCTTTATT
25980 TTTT
1 TTTT
25984 TAAGTTCAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTATCTTTTCTTTATT
Found at i:30975 original size:13 final size:13
Alignment explanation
Indices: 30957--30981 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30947 GAGAAATAGT
30957 GAAAAAGAAAAAA
1 GAAAAAGAAAAAA
30970 GAAAAAGAAAAA
1 GAAAAAGAAAAA
30982 TGAGTAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:39439 original size:181 final size:181
Alignment explanation
Indices: 39133--39486 Score: 548
Period size: 181 Copynumber: 2.0 Consensus size: 181
39123 AATATTATTA
* * * *
39133 TACTTAAGTAATTGAGGATGAGAAGTAGAGACTATGAGCATTCTTTGTAGTAAATAAAAAATGAT
1 TACTTAAGCAATTGAGGATGAGAAGTAGAGACTATAAGCATTCTTTGTAGTAAAGAAAAAATAAT
* * * *
39198 CATCCCCAAGTAAATCTCAAGAATACACTCACGATTTTTATCCAAATAATTAATTTTCAATGCTT
66 CATCCCCAAGCAAATCTCAAGAAGACACTCACGATTTTTATCCAAACAATTAAATTTCAATGCTT
39263 GGAGTCCAACAAAATTTTAACGCAAACTAAGAACCTATTACTCATTAGACT
131 GGAGTCCAACAAAATTTTAACGCAAACTAAGAACCTATTACTCATTAGACT
* * *
39314 TACTTAAGCAATTGGGGATGAGAAGTAGATACTATAAGCATTCTTTGTAGTAAAGAAAAAGTAAT
1 TACTTAAGCAATTGAGGATGAGAAGTAGAGACTATAAGCATTCTTTGTAGTAAAGAAAAAATAAT
* *
39379 CATCCCCAAGCAAATCTCAAG-AGGCACTCATGATTTTTTATCCAAACAATTAAATTTCAATGCT
66 CATCCCCAAGCAAATCTCAAGAAGACACTCACGA-TTTTTATCCAAACAATTAAATTTCAATGCT
* * *
39443 TGGAGTCCAACAAAATTTTGATGCAAACTAAGAACTTATTACTC
130 TGGAGTCCAACAAAATTTTAACGCAAACTAAGAACCTATTACTC
39487 TTGAATAAAA
Statistics
Matches: 156, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
180 9 0.06
181 147 0.94
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (181 bp):
TACTTAAGCAATTGAGGATGAGAAGTAGAGACTATAAGCATTCTTTGTAGTAAAGAAAAAATAAT
CATCCCCAAGCAAATCTCAAGAAGACACTCACGATTTTTATCCAAACAATTAAATTTCAATGCTT
GGAGTCCAACAAAATTTTAACGCAAACTAAGAACCTATTACTCATTAGACT
Found at i:42512 original size:26 final size:26
Alignment explanation
Indices: 42476--42530 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
42466 ACTTTCAAGA
42476 ATACCTTATCGCCCACAGCATATTCG
1 ATACCTTATCGCCCACAGCATATTCG
42502 ATACCTTATCGCCCACAGCATATTCG
1 ATACCTTATCGCCCACAGCATATTCG
42528 ATA
1 ATA
42531 TCTCTCCGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (26 bp):
ATACCTTATCGCCCACAGCATATTCG
Found at i:47484 original size:17 final size:17
Alignment explanation
Indices: 47462--47528 Score: 82
Period size: 17 Copynumber: 3.9 Consensus size: 17
47452 GACAAATGGA
47462 AATGCAATGACAATAAG
1 AATGCAATGACAATAAG
*
47479 AATGCAGTGACAATTAA-
1 AATGCAATGACAA-TAAG
*
47496 AATGCAATGACAATGAG
1 AATGCAATGACAATAAG
**
47513 AATGGGATGACAATAA
1 AATGCAATGACAATAA
47529 TTACTAACAG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
16 2 0.05
17 37 0.88
18 3 0.07
ACGTcount: A:0.49, C:0.10, G:0.21, T:0.19
Consensus pattern (17 bp):
AATGCAATGACAATAAG
Found at i:47982 original size:21 final size:21
Alignment explanation
Indices: 47956--47995 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
47946 TTTACCTCGA
*
47956 CTTCTT-TTCCTTCCTCTTGTT
1 CTTCTTCTT-CTTCCGCTTGTT
47977 CTTCTTCTTCTTCCGCTTG
1 CTTCTTCTTCTTCCGCTTG
47996 CATTTTTCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.00, C:0.35, G:0.07, T:0.57
Consensus pattern (21 bp):
CTTCTTCTTCTTCCGCTTGTT
Found at i:49748 original size:6 final size:6
Alignment explanation
Indices: 49739--49763 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
49729 AATTAAACTG
49739 AAACAA AAACAA AAACAA AAACAA A
1 AAACAA AAACAA AAACAA AAACAA A
49764 CTAAAATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (6 bp):
AAACAA
Found at i:53628 original size:18 final size:18
Alignment explanation
Indices: 53592--53635 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
53582 CATCAGGTTA
* **
53592 CATTGACATAGTTTTTTG
1 CATTGACATAGGTAGTTG
53610 CATTGACATAGGTAGTTG
1 CATTGACATAGGTAGTTG
*
53628 CATCGACA
1 CATTGACA
53636 ATTTTGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (18 bp):
CATTGACATAGGTAGTTG
Found at i:60179 original size:18 final size:20
Alignment explanation
Indices: 60135--60184 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
60125 TAATTTAAAC
60135 AAGTTTAGCATACTTATATAA
1 AAGTTTAG-ATACTTATATAA
*
60156 AAGTTTAGATA-TTA-ATAG
1 AAGTTTAGATACTTATATAA
60174 AAGTTTAGATA
1 AAGTTTAGATA
60185 GCATTCCCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 14 0.50
19 3 0.11
20 3 0.11
21 8 0.29
ACGTcount: A:0.44, C:0.04, G:0.14, T:0.38
Consensus pattern (20 bp):
AAGTTTAGATACTTATATAA
Done.