Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000595.1 Kokia drynarioides strain JFW-HI SEQ_111528, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21372
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:7401 original size:4 final size:4

Alignment explanation


    Indices: 7384--7417  Score: 59
    Period size: 4  Copynumber: 8.5  Consensus size: 4

       7374 TTTCCTTAAA

                       *                              
       7384 TTAT TTAT TCAT TTAT TTAT TTAT TTAT TTAT TT
          1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT

       7418 TCATGCATCT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   4   28  1.00

ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74


Consensus pattern (4 bp):   
TTAT

Found at i:12315 original size:15 final size:15

Alignment explanation


    Indices: 12295--12325  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

      12285 GAAGCGCTTG

                           
      12295 ATAAATTTAAAGTTT
          1 ATAAATTTAAAGTTT

                    *      
      12310 ATAAATTTGAAGTTT
          1 ATAAATTTAAAGTTT

             
      12325 A
          1 A

      12326 ACTTCAGTGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45


Consensus pattern (15 bp):   
ATAAATTTAAAGTTT
Done.