Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005961.1 Kokia drynarioides strain JFW-HI SEQ_120361, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5922
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34


Found at i:943 original size:208 final size:208

Alignment explanation


    Indices: 351--1362  Score: 1467
    Period size: 208  Copynumber: 4.9  Consensus size: 208

        341 TTGACTCGGC

                             *                      *      **      *    *  * 
        351 CTTCTTCTCAGTATCTTATCCGGAAGATGACCGTGTCA-CTTGTTTTGGTTCGCTGCTCTATACC
          1 CTTCTTCTCAGTATCTTGTCCGGAAGATGACC--G-CATCGT-TTTTAATTCGCTTCTCTGTATC

                         *        *                                          
        415 TCATCAGGAAGACAAATTTGGTTCACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTT
         62 TCATCAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTT

                 *          *   *                 *            **   *   *   *
        480 CAACCTGCTTCTCAGTGTCTTATCAGGAAGCTGGGGTTTGAAGATTTTGCTCATTTCGAGGCTCG
        127 CAACCCGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTTGTTTTGAGCCTCT

                             
        545 TTTGGGTTTGATTTGGT
        192 TTTGGGTTTGATTTGGT

                                                                     *       
        562 CTTCTTCTCAGTATC-T-T------G-T--CCGCATCGTTTTTAATTCGCTTCTCTGCATCTCAT
          1 CTTCTTCTCAGTATCTTGTCCGGAAGATGACCGCATCGTTTTTAATTCGCTTCTCTGTATCTCAT

            *       *     *                                                  
        616 TAGGAAGATGAATTCGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCAAC
         66 CAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCAAC

             *          *                     *            *                 
        681 CTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTTGAAGATTTTGCTCGTTTTGAGCCTCTTTTG
        131 CCGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTTGTTTTGAGCCTCTTTTG

                         
        746 GGTTTGATTTGGT
        196 GGTTTGATTTGGT

             *                    *                        *                 
        759 CATCTTCTCAGTATCTTGTCCGAAAGATGACCGCATCGTTTTTAATTTGCTTCTCTGTATCTCAT
          1 CTTCTTCTCAGTATCTTGTCCGGAAGATGACCGCATCGTTTTTAATTCGCTTCTCTGTATCTCAT

                                                             *            *  
        824 CAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACATTTTATTGCTTCGAC
         66 CAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCAAC

                                      *                                      
        889 CCGCTTCTCAGTATCTCATCAGGAAGTTGGGGTTCGAAGATTTTGCTTGTTTTGAGCCTCTTTTG
        131 CCGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTTGTTTTGAGCCTCTTTTG

                         
        954 GGTTTGATTTGGT
        196 GGTTTGATTTGGT

                                           *     *                   *       
        967 CTTCTTCTCAGTATCTTGTCCGGAAGATGACTGCATCATTTTTAATTCGCTTCT-TCATATCTCA
          1 CTTCTTCTCAGTATCTTGTCCGGAAGATGACCGCATCGTTTTTAATTCGCTTCTCT-GTATCTCA

                      *      *                    *               *        * 
       1031 TCAGGAAGACTAATTTGTTACACTTCTCAGTATCTCATTAGGAAGCTAACCTTTGATTGCTTCGA
         65 TCAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCAA

                                                                             
       1096 CCCGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTTGTTTTGAGCCTCTTTT
        130 CCCGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTTGTTTTGAGCCTCTTTT

                          
       1161 GGGTTTGATTTGGT
        195 GGGTTTGATTTGGT

                             *      *                              *         
       1175 CTTCTTCTCAGTATCTTATCCGGATGATGACCGCATCGTTTTTAATTCGCTTCTCCGTATCTCAT
          1 CTTCTTCTCAGTATCTTGTCCGGAAGATGACCGCATCGTTTTTAATTCGCTTCTCTGTATCTCAT

                                                                             
       1240 CAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAG-TAACCTTTTATTGCTTCAAC
         66 CAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCAAC

                      *                   *                     *      
       1304 CCGCTTCTCAATATCTCATCAGGAAGCTGGAGTTCGAAGATTTTGCTTGTTTCGAGCCT
        131 CCGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTTGTTTTGAGCCT

       1363 TGTTTGGATC


Statistics
Matches: 731,  Mismatches: 56, Indels: 32
        0.89            0.07        0.04

Matches are distributed among these distances:
 197  169  0.23
 198    4  0.01
 199    1  0.00
 200    2  0.00
 202    1  0.00
 203    1  0.00
 205    1  0.00
 206    1  0.00
 207   75  0.10
 208  459  0.63
 209    1  0.00
 210    1  0.00
 211   15  0.02

ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38


Consensus pattern (208 bp):   
CTTCTTCTCAGTATCTTGTCCGGAAGATGACCGCATCGTTTTTAATTCGCTTCTCTGTATCTCAT
CAGGAAGACGAATTTGGTACACTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCAAC
CCGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTTGCTTGTTTTGAGCCTCTTTTG
GGTTTGATTTGGT

Done.