Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005963.1 Kokia drynarioides strain JFW-HI SEQ_120363, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2909
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36


Found at i:50 original size:30 final size:30

Alignment explanation


    Indices: 9--83  Score: 96
    Period size: 30  Copynumber: 2.5  Consensus size: 30

          1 CTAAACGG

                  *                       
          9 GCTTTCTAGAAAGCTCACCCAGCTGAACAA
          1 GCTTTCCAGAAAGCTCACCCAGCTGAACAA

                            **          **
         39 GCTTTCCAGAAAGCTCTTCCAGCTGAACGC
          1 GCTTTCCAGAAAGCTCACCCAGCTGAACAA

            *              
         69 TCTTTCCAGAAAGCT
          1 GCTTTCCAGAAAGCT

         84 TGCCCGGTTA


Statistics
Matches: 39,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  30   39  1.00

ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24


Consensus pattern (30 bp):   
GCTTTCCAGAAAGCTCACCCAGCTGAACAA

Found at i:2488 original size:32 final size:33

Alignment explanation


    Indices: 2438--2506  Score: 88
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       2428 CTTAATTTGA

                *                             
       2438 AATTTAAATTAATCCCTTT-AAAATCCTAACTAG
          1 AATTCAAATTAATCCCTTTCAAAATCCTAA-TAG

                       *        *            
       2471 AATTCAAATTACT-CCTTTCCAAATCCTAATAG
          1 AATTCAAATTAATCCCTTTCAAAATCCTAATAG

                
       2503 AATT
          1 AATT

       2507 TATTTTTCTT


Statistics
Matches: 32,  Mismatches: 3, Indels: 3
        0.84            0.08        0.08

Matches are distributed among these distances:
  32   12  0.38
  33   20  0.62

ACGTcount: A:0.41, C:0.20, G:0.03, T:0.36


Consensus pattern (33 bp):   
AATTCAAATTAATCCCTTTCAAAATCCTAATAG
Done.