genome.fa.s5967.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005967.1 Kokia drynarioides strain JFW-HI SEQ_120373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  249594

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179--203	12	2.1	12	100	0	50	52	0	0	48	1.00
379--449	4	18.5	4	74	18	53	0	25	0	74	0.82
372--449	28	2.6	28	81	15	86	0	23	0	76	0.78
331--605	136	2.0	139	93	3	477	18	20	2	59	1.48
516--588	4	18.5	4	79	13	62	0	27	0	72	0.85
4871--4918	23	2.1	23	100	0	96	18	12	27	41	1.86
5891--5937	15	3.3	15	94	5	80	82	0	0	17	0.66
10679--10708	6	5.0	6	95	0	51	86	13	0	0	0.57
10995--11037	19	2.4	18	85	11	54	16	11	0	72	1.13
21907--21938	2	16.0	2	100	0	64	50	0	0	50	1.00
22264--22322	26	2.3	26	85	8	84	50	0	0	49	1.00
22782--22820	3	13.0	3	94	0	51	25	0	7	66	1.18
23678--23820	60	2.3	62	84	3	182	47	2	0	48	1.21
24005--24035	16	1.9	16	93	0	53	32	32	0	35	1.58
27699--27780	40	2.0	40	100	0	164	46	21	21	9	1.80
29881--30563	245	2.8	244	77	12	732	45	14	11	29	1.79
32370--32409	11	3.3	12	82	10	55	32	2	0	65	1.06
34282--34369	39	2.3	39	86	4	115	27	15	17	39	1.90
34297--34424	39	3.3	39	80	10	120	26	17	17	38	1.92
40896--40940	18	2.5	18	92	0	72	17	24	24	33	1.96
40949--40975	14	1.9	14	100	0	54	22	14	22	40	1.90
42565--42594	6	5.0	6	95	0	51	16	16	46	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59136--59169	17	2.0	17	88	0	50	32	0	2	64	1.08
60211--60372	60	2.7	59	76	5	164	39	5	16	38	1.71
61694--61766	22	3.4	22	72	12	62	31	2	0	65	1.06
62152--62193	20	2.0	23	86	13	63	26	2	2	69	1.13
62424--62474	21	2.4	21	96	0	93	29	5	11	52	1.61
63531--63605	30	2.5	30	97	0	141	25	36	10	28	1.89
75922--75957	17	2.1	17	94	0	63	27	19	19	33	1.96
80697--80729	15	2.2	15	94	0	57	51	0	18	30	1.46
84681--84733	21	2.5	21	82	11	65	26	18	22	32	1.97
87056--87109	21	2.6	21	76	5	56	31	25	12	29	1.93
94592--94738	39	3.8	39	82	1	143	23	16	21	38	1.92
94592--94737	78	1.9	78	82	2	186	22	16	21	39	1.92
94828--94963	73	1.9	73	84	0	182	22	27	20	28	1.99
97366--97398	11	3.0	11	90	0	57	63	3	0	33	1.10
103517--103544	12	2.3	12	100	0	56	53	17	0	28	1.44
106677--106709	11	3.0	11	90	0	57	63	3	0	33	1.10
106747--106775	5	5.8	5	100	0	58	79	0	0	20	0.74
111033--111066	16	2.1	16	100	0	68	44	32	17	5	1.73
112054--112163	39	2.8	39	74	0	121	26	16	19	38	1.92
122577--122614	19	2.0	20	85	15	53	36	0	5	57	1.21
124276--124310	13	2.8	12	87	8	52	48	0	5	45	1.26
124490--124533	22	1.9	24	86	9	65	43	0	13	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124565--124621	18	2.9	20	75	17	57	42	7	10	40	1.66
128232--128281	24	2.1	23	85	10	66	24	18	28	30	1.97
131571--131805	117	2.0	117	88	1	346	25	22	15	36	1.93
133939--134001	22	2.9	21	75	9	65	65	3	1	30	1.18
134898--134956	29	2.0	29	84	12	77	64	0	1	33	1.04
136935--137193	129	2.0	130	96	0	475	31	16	12	39	1.86
137155--137263	29	3.7	29	82	7	116	45	0	1	52	1.11
143825--143881	27	2.1	27	96	0	105	35	15	15	33	1.90
146148--146336	94	2.0	94	94	0	333	40	16	25	16	1.90
159064--159097	13	2.5	14	85	9	52	76	0	17	5	0.98
164204--164375	50	3.4	50	81	1	184	37	19	21	21	1.95
167438--167512	37	2.0	37	100	0	150	26	5	14	53	1.62
170121--170208	46	1.9	46	84	9	117	26	2	12	59	1.45
178811--178845	17	2.1	17	94	0	61	54	8	5	31	1.54
180607--180681	28	2.6	28	76	15	82	57	6	8	28	1.53
180523--180681	31	5.2	30	72	17	114	58	8	7	25	1.54
185612--185680	34	2.0	34	100	0	138	31	17	20	30	1.95
190841--190880	16	2.5	16	84	12	55	62	0	2	35	1.09
195146--195184	13	2.9	13	85	7	51	25	2	0	71	0.98
197132--197193	29	2.1	29	90	6	97	48	3	3	45	1.34
201639--201731	45	2.1	45	100	0	186	24	17	21	36	1.94
202882--203180	148	2.0	149	97	0	564	34	9	10	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203307--203352	22	2.1	22	87	0	65	13	2	23	60	1.43
210730--210772	23	1.9	22	85	4	59	34	16	0	48	1.46
210729--210777	23	2.2	22	78	7	55	38	14	0	46	1.44
216126--216178	21	2.5	20	85	11	63	30	26	15	28	1.96
218413--218459	23	2.0	23	88	8	69	31	19	4	44	1.70
221386--221619	52	4.7	52	82	12	301	24	14	26	34	1.94
221516--221601	42	2.0	42	100	0	172	20	13	29	36	1.92
222782--222865	32	2.6	32	79	3	89	30	2	17	48	1.60
223803--223921	50	2.5	50	81	9	133	29	9	17	43	1.80
231620--231657	19	2.0	19	89	0	58	10	34	13	42	1.78
232668--232710	15	2.6	16	85	10	52	74	4	0	20	1.00
232655--232705	21	2.4	20	83	6	57	78	3	1	15	0.99
242870--242939	6	12.0	6	72	17	58	44	1	2	51	1.25
242870--242934	17	3.8	17	81	4	85	44	1	3	50	1.26
243623--243670	24	1.9	24	91	8	78	56	0	2	41	1.11
243620--243681	24	2.6	23	82	12	72	54	0	3	41	1.16
244794--245006	30	7.2	30	76	14	142	37	22	2	37	1.69
244794--245118	29	11.1	30	77	11	234	37	24	2	34	1.69
244791--244964	59	2.9	59	83	3	199	37	21	2	37	1.67
244885--244935	16	3.3	16	67	10	52	37	17	0	45	1.49
244860--245129	59	4.6	56	74	16	162	38	25	1	34	1.67
248647--248710	6	11.0	6	73	18	55	45	4	1	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248637--248700	17	3.8	16	82	10	74	39	3	1	56	1.25
248647--248710	11	5.5	12	73	19	55	45	4	1	48	1.32
249429--249484	3	18.3	3	78	10	51	55	3	1	39	1.28

Tables:   1

The End!