Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005974.1 Kokia drynarioides strain JFW-HI SEQ_120392, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 805

Length: 1343
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29


Found at i:1301 original size:20 final size:20

Alignment explanation


    Indices: 1272--1324  Score: 63
    Period size: 20  Copynumber: 2.7  Consensus size: 20

       1262 ATGAAGTGTG

                                
       1272 CCAA-CAGCATCAGGCAGCA
          1 CCAAGCAGCATCAGGCAGCA

              *            *    
       1291 CCGAGCAGCATCAGGTAGCA
          1 CCAAGCAGCATCAGGCAGCA

            *      *      
       1311 TCAAGCAACATCAG
          1 CCAAGCAGCATCAG

       1325 CAATAGTTGG


Statistics
Matches: 28,  Mismatches: 5, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  19    3  0.11
  20   25  0.89

ACGTcount: A:0.36, C:0.32, G:0.23, T:0.09


Consensus pattern (20 bp):   
CCAAGCAGCATCAGGCAGCA
Done.