Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005976.1 Kokia drynarioides strain JFW-HI SEQ_120394, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40


Found at i:267 original size:42 final size:44

Alignment explanation


    Indices: 221--303  Score: 100
    Period size: 42  Copynumber: 1.9  Consensus size: 44

        211 CTTTTGATGA

                             *   *               *       
        221 AATTAT-TTGCTCATCATTGGGGAGTT-TA-TATTATTTTATTAT
          1 AATTATATT-CTCATCACTGGAGAGTTCTATTATTATGTTATTAT

                        *                            
        263 AATTATATTCTCTTCACTGGAGAGTTCTATTATTATGTTAT
          1 AATTATATTCTCATCACTGGAGAGTTCTATTATTATGTTAT

        304 GATTATCTAT


Statistics
Matches: 34,  Mismatches: 4, Indels: 4
        0.81            0.10        0.10

Matches are distributed among these distances:
  42   20  0.59
  43    4  0.12
  44   10  0.29

ACGTcount: A:0.27, C:0.10, G:0.13, T:0.51


Consensus pattern (44 bp):   
AATTATATTCTCATCACTGGAGAGTTCTATTATTATGTTATTAT
Done.