Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005980.1 Kokia drynarioides strain JFW-HI SEQ_120398, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2564
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42


Found at i:1362 original size:15 final size:15

Alignment explanation


    Indices: 1338--1368  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1328 ATCGTTAAAC

                           
       1338 TAACTATAAGTAAGT
          1 TAACTATAAGTAAGT

                 *         
       1353 TAACTGTAAGTAAGT
          1 TAACTATAAGTAAGT

             
       1368 T
          1 T

       1369 TACCAAAAAC


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35


Consensus pattern (15 bp):   
TAACTATAAGTAAGT
Done.