Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005982.1 Kokia drynarioides strain JFW-HI SEQ_120400, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7405
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:3218 original size:10 final size:10

Alignment explanation


    Indices: 3203--3230  Score: 56
    Period size: 10  Copynumber: 2.8  Consensus size: 10

       3193 GCCTGCCTAC

                      
       3203 TTGCTCTTCT
          1 TTGCTCTTCT

                      
       3213 TTGCTCTTCT
          1 TTGCTCTTCT

                    
       3223 TTGCTCTT
          1 TTGCTCTT

       3231 GAGCATGGAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   18  1.00

ACGTcount: A:0.00, C:0.29, G:0.11, T:0.61


Consensus pattern (10 bp):   
TTGCTCTTCT

Found at i:3778 original size:23 final size:23

Alignment explanation


    Indices: 3748--3797  Score: 100
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       3738 GTCTTAATTT

                                   
       3748 TCACTACCCAAATGTGGTAGTTC
          1 TCACTACCCAAATGTGGTAGTTC

                                   
       3771 TCACTACCCAAATGTGGTAGTTC
          1 TCACTACCCAAATGTGGTAGTTC

                
       3794 TCAC
          1 TCAC

       3798 CATTAAACTG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   27  1.00

ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30


Consensus pattern (23 bp):   
TCACTACCCAAATGTGGTAGTTC

Done.