Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005991.1 Kokia drynarioides strain JFW-HI SEQ_120413, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7141
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31


Found at i:1440 original size:3 final size:3

Alignment explanation


    Indices: 1427--1459  Score: 57
    Period size: 3  Copynumber: 10.7  Consensus size: 3

       1417 AATAGCCAAG

                                                       
       1427 AGA AGGA AGA AGA AGA AGA AGA AGA AGA AGA AG
          1 AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA AG

       1460 TTCAAAACAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   3   26  0.90
   4    3  0.10

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (3 bp):   
AGA

Found at i:2107 original size:16 final size:17

Alignment explanation


    Indices: 2075--2107  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

       2065 ACTCAAGCTT

                      *      
       2075 AATATATAATTTAAATA
          1 AATATATAATCTAAATA

                             
       2092 AATATA-AATCTAAATA
          1 AATATATAATCTAAATA

       2108 TTTAATTTTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    9  0.60
  17    6  0.40

ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36


Consensus pattern (17 bp):   
AATATATAATCTAAATA
Done.