Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000006.1 Kokia drynarioides strain JFW-HI SEQ_8437, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 760

Length: 1267
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33


Found at i:668 original size:21 final size:21

Alignment explanation


    Indices: 630--670  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        620 TATATTATTG

                       *         
        630 ATAAACTTTTTTTATATTTAC
          1 ATAAACTTTTTATATATTTAC

                                 
        651 ATAAA-TTTTTATACTATTTA
          1 ATAAACTTTTTATA-TATTTA

        671 TGTTATATGG


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    7  0.39
  21   11  0.61

ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56


Consensus pattern (21 bp):   
ATAAACTTTTTATATATTTAC
Done.