Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006016.1 Kokia drynarioides strain JFW-HI SEQ_120456, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 638

Length: 1064
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31


Found at i:1051 original size:7 final size:7

Alignment explanation


    Indices: 1039--1064  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

       1029 TTCATAATAT

                   
       1039 TCCCTTC
          1 TCCCTTC

                   
       1046 TCCCTTC
          1 TCCCTTC

                   
       1053 TCCCTTC
          1 TCCCTTC

                 
       1060 TCCCT
          1 TCCCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42


Consensus pattern (7 bp):   
TCCCTTC
Done.