Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006023.1 Kokia drynarioides strain JFW-HI SEQ_120467, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3687
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.35


Found at i:2512 original size:23 final size:23

Alignment explanation


    Indices: 2480--2621  Score: 116
    Period size: 23  Copynumber: 6.2  Consensus size: 23

       2470 GCTGGGGAAA

                 *       *         
       2480 CAGTAAGCACACACAGTGC-AAT
          1 CAGTAGGCACACAAAGTGCAAAT

                          *         
       2502 CCAGTAGGCACACACAGTGC-AAT
          1 -CAGTAGGCACACAAAGTGCAAAT

                    *        *      
       2525 CAGTAGGCGCACATAA-CGCAAAT
          1 CAGTAGGCACACA-AAGTGCAAAT

                                    
       2548 CAGTAGGCACACAAAGTGCGAAA-
          1 CAGTAGGCACACAAAGTGC-AAAT

                 *                  
       2571 CAGTAAGCACACAAAGTGCGAAA-
          1 CAGTAGGCACACAAAGTGC-AAAT

                 * *    *           
       2594 CAGTAAGTACACGAAGTGCGAAAT
          1 CAGTAGGCACACAAAGTGC-AAAT

                 
       2618 -AGTA
          1 CAGTA

       2622 AGTGCGCTAG


Statistics
Matches: 105,  Mismatches: 9, Indels: 10
        0.85            0.07        0.08

Matches are distributed among these distances:
  22   16  0.15
  23   86  0.82
  24    3  0.03

ACGTcount: A:0.42, C:0.23, G:0.23, T:0.13


Consensus pattern (23 bp):   
CAGTAGGCACACAAAGTGCAAAT

Done.