Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006032.1 Kokia drynarioides strain JFW-HI SEQ_120486, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 841

Length: 1402
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41


Found at i:638 original size:215 final size:215

Alignment explanation


    Indices: 85--1358  Score: 1222
    Period size: 216  Copynumber: 5.9  Consensus size: 215

         75 GATTTGGTTC

                     *                                      **  *  * *       
         85 CTTATTTATTTGAGAATTGTTTCTCTCTTGGTTCTTGGCC-AATCTTCCAAAGTTTTTAAAC-TT
          1 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA-CTT-TGAACTTGTCAAACTTT

                                *  *         * *             *          *    
        148 TATCGAGTTCTTTTATAACTGCGGTTCCTTAAATTTTTCAAGACGATCCTTTCCTTCGAGTAATT
         64 TA-CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT

                        *  *   **     *          *        * *   *            
        213 TTTCGAACATTCGATTCTCGGGAAATTGCATCATTTGATCCAAATAATATGTTATTTTGTAAACA
        128 TTTCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA

                          *       *
        278 ACTTTTGGTCTTTGGATTAAAAT
        193 ACTTTTGGTCTTTGAATTAAAAA

            *                 *           *        *  *           *          
        301 TTTATTTATG-GAGAATTATTTCTCTCTTGATTCTT---AGAGCTTTCGAACTTTTCAAACTTTT
          1 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT-GAACTTGTCAAACTTTT

                            *                                      *        *
        362 ACGAGTTCTTTT-TAAATTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCTAGCAATTTC
         65 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT

                *                         *                        *         
        426 TCGAGCATTCCATGCTCAAGAAATCGCATCCTTTGGTCCAAATAGTTTGTCATTTCGT-AACAAC
        130 TCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAC

                               * 
        490 TTTTGGTCTTTGAATTAAAGA
        195 TTTTGGTCTTTGAATTAAAAA

                                    *     *                     *   *        
        511 CTTATTTATGTGAGAATTGTTTCTTTCTTGTTTCTTGGCCGAACATTTGAACATGTAAAACTTTT
          1 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTTGAACTTGTCAAACTTTT

             **                * *            *            **  *             
        576 AAAAGTTCTTTTATAACTTTGGTTCCTTAAAGTAATCAAGACGATCCGCTCATTCGAGCAATTTT
         65 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT

             ** *        *   *     *  *        *      *      *               
        641 TTTAGCATT-CATTCTCGAGAAAGCGTATCATTT-CTACCAAGTAGTTTATCATTTTGTAAACAA
        130 TCGAACATTCCATGCTCAAGAAATCGCATCATTTGGT-CCAAATAGTTTGTCATTTTGTAAACAA

                  *               
        704 CTTTTGCTCTTTGAATTAAAAA
        194 CTTTTGGTCTTTGAATTAAAAA

             *    * ** * *      *          *      *        **     *          
        726 CATATTAACATTATAATTGTCTCTCTCTTGGCTCTTGGTCGAACTTCCAAACTTTTCAAACTTTT
          1 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-TGAACTTGTCAAACTTTT

            *        *     * *       *   *                         *         
        791 TCGAGTTCTATTATAGCATCGATTCTTTACAGTATTCAAGACGATCCATTCCTTCAAGCAA-TTT
         65 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT

                         *               *                       *           
        855 TCTGAACATTCCAAGCTCAAGAAATCGCACCATTTGGTCCAAATAGTTTGTCACTTTGTAAACAA
        130 TC-GAACATTCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA

                       **         
        920 CTTTTGGTCTTAAAATTAAAAA
        194 CTTTTGGTCTTTGAATTAAAAA

                    **       *       *           * *                         
        942 CTTATTTACCTGAGAATGGTTTCTCCCTTGGTTCTTGACTGAACTTTCGAA-TTAGTCAAACTTT
          1 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT-GAACTT-GTCAAACTTT

                *   *           * *         *         *    *         *       
       1006 TACGTGTTATTTTATAACTTTGGTTCCTTAAAATATTCAAGATGATCTATTCCTTCGTGCAATTT
         64 TACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT

             * *               *                   *     *   *               
       1071 TCCAAACATTCCATGCTCAGGAAATCGCATCATTTGGTCTAAATATTTTATCATTTTGTAAACAA
        129 TTCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA

                *                 
       1136 CTTTCGGTCTTTGAATTAAAAA
        194 CTTTTGGTCTTTGAATTAAAAA

                     *                *           *        *      *          
       1158 CTTATTTATTTGAGAATTGTTTCTCTATTGGTTCTTGGTCGAACTTCCGAACTTATCAAACTTTT
          1 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-TGAACTTGTCAAACTTTT

            **     *  *                              *            *    *     
       1223 TTGAGTTATTCTATAACTTCGATTCCTTAAAGTATTCAAGATGATCAATCAATTTCTTCAAGCAA
         65 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATC---C-ATTCCTTCGAGCAA

                             *   **            *               *   *         
       1288 TTTTTCGAACATTCCATTCTCGGGAAATCGCATCACTTGGTCCAAATAGTTAGTCCTTTTGTAAA
        126 TTTTTCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA

            *     
       1353 AAACTT
        191 CAACTT

       1359 ATTTATATGA


Statistics
Matches: 846,  Mismatches: 188, Indels: 44
        0.78            0.17        0.04

Matches are distributed among these distances:
 210   33  0.04
 211  111  0.13
 212   24  0.03
 213    6  0.01
 214   70  0.08
 215  200  0.24
 216  324  0.38
 217    7  0.01
 220   71  0.08

ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41


Consensus pattern (215 bp):   
CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTGAACTTGTCAAACTTTTA
CGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
CGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACT
TTTGGTCTTTGAATTAAAAA

Done.