Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006047.1 Kokia drynarioides strain JFW-HI SEQ_120514, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4776
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:2087 original size:18 final size:17

Alignment explanation


    Indices: 2058--2095  Score: 58
    Period size: 18  Copynumber: 2.2  Consensus size: 17

       2048 ATTTTTAATA

                           * 
       2058 TATATTTTAAATTATTT
          1 TATATTTTAAATTATGT

                              
       2075 TATATTATTAAATTATGT
          1 TATATT-TTAAATTATGT

               
       2093 TAT
          1 TAT

       2096 CGTCTTTAAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  17    6  0.32
  18   13  0.68

ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61


Consensus pattern (17 bp):   
TATATTTTAAATTATGT
Done.