Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006053.1 Kokia drynarioides strain JFW-HI SEQ_120524, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7881
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Found at i:373 original size:215 final size:213
Alignment explanation
Indices: 2--606 Score: 707
Period size: 215 Copynumber: 2.8 Consensus size: 213
1 T
2 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATTATGC-AAT
1 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGA-CAAATTATGCGAA-
* * * * * *
66 TTCTTGAGAATGGAATGTTAAGAAATTTGCTCGAAGGAATGGATCGTCTTGAATACTTAAAGGAA
64 TTCTCGAGAATGAAATGAT-CGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAA
* * * *
131 CCGAAGTTATAAAAGAACACGTAAAAGTTTGTCAACTTCGAATGTTCTACCGT-GAACCAAGAGA
128 CAGAAGTTATAAAAGAACACGTAAAAGTTTGTCAAGTTCGAAAGTTC-ACCATAGAACCAAGAGA
* *
195 GAAACTATTCTTACCTAAATAA
192 GAAACAATTCTAACCTAAATAA
* * *
217 GTTTTTAATTTAAAGATCAAAAGTTGTTTACAAAATGATAACTATTTAGATCAAATTATGCGAAT
1 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGA-CAAATTATGCGAAT
* * *
282 TCTCGAGCATGAAATGATCGAAAAGTTACTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAAC
65 TCTCGAGAATGAAATGATCGAAAA-TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAAC
* * * ** *
347 TGAAGTTATAAAAGACCACGTAAAAGTTTGTCAAGTTCAAAAGTTCGGCATAGAACCAAGAGATA
129 AGAAGTTATAAAAGAACACGTAAAAGTTTGTCAAGTTCGAAAGTTCACCATAGAACCAAGAGAGA
* *
412 AACAATTCTAAGCTAAATAT
194 AACAATTCTAACCTAAATAA
* * * ** *
432 GTTTTTAATTCAAAGCCCAAAAGTAGTTTGCAAAATGACAACTATTTAGACCTATTGATGCGATT
1 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACAAATT-ATGCGAAT
* * * * * * *
497 TC-CCA-AATGTGAACTGTATGGAAAATGGCTTGAAGGAATGGATCATCTTGAA-ACTTTATGGA
65 TCTCGAGAA--TGAAATG-ATCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGA
* * *
559 ACAAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTC
127 ACAGAAGTTATAAAAGAACACGTAAAAGTTTGTCAAGTTCGAAAGTTC
607 GATCGATAAC
Statistics
Matches: 332, Mismatches: 51, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
213 1 0.00
214 63 0.19
215 259 0.78
216 9 0.03
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (213 bp):
GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACAAATTATGCGAATT
CTCGAGAATGAAATGATCGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAG
AAGTTATAAAAGAACACGTAAAAGTTTGTCAAGTTCGAAAGTTCACCATAGAACCAAGAGAGAAA
CAATTCTAACCTAAATAA
Found at i:1230 original size:606 final size:605
Alignment explanation
Indices: 97--1244 Score: 1518
Period size: 606 Copynumber: 1.9 Consensus size: 605
87 GAAATTTGCT
* * *
97 CGAAGGAATGGATCGTCTTGAATACTTAAAGGAACCGAAGTTATAAAAGAACACGTAAAAGTTTG
1 CGAAGGAATGGATCATCTAGAATACTTAAAGGAACCGAAGTTAAAAAAGAACACGTAAAAGTTTG
* * * * ** *
162 TCAACTTCGAATGTTCTACCGTGAACCAAGAGAGAAACTATTCTTACCTAAATAAGTTTTTAATT
66 TCAACTTCGAAAGTTCAACCGAGAACCAAGAGAGAAACAATAATGACCTAAATAAGTTTTTAATT
* * * * * *
227 TAAAGATCAAAAGTTGTTTACAAAATGATAACTATTTAGATCAAATTATGCGAATTCTCGAGCAT
131 CAAAGACCAAAAGTTCTTTACAAAATGATAACTATTTAGAACAAATGATGCGAATTCTCAAGCAT
* * * * *
292 GAAATGATCGAAAAGTTACTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACTGAAGTTATA
196 GAAATGATCGAAAAATTACTCAAAGGAATGGATAGTCTTAAATACTTTAAGGAACCGAAGTAATA
* * *
357 AAAGACCACGTAAAAGTTTGTCAAGTTCAAAAGTTCGGCATAGAACCAAGAGATAAACAATTCTA
261 AAAGAACACGTAAAAGTTTGTCAAGTTCAAAAGTTAGCCATAGAACCAAGAGATAAACAATTCTA
* * * * * * *
422 AGCTAAATATGTTTTTAATTCAAAGCCCAAAAGTAGTTTGCAAAATGACAACTATTTAGACCTAT
326 ACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAATATTTAGACCGAA
* * *
487 TGATGCGATTTCCCAAATGTGAACTGTATGGAAAATGGCTTGAAGGAATGGATCATCTTGAAACT
391 TAATGCGATTTCCCAAATGTGAACTGTATGAAAAATGGCTTGAAGGAATGAATCATCTTGAAACT
* * *
552 TTATGGAACAAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGATCGATAAC
456 TTAAGGAACAAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGATCAAGAAC
*
617 CAAGAAAGAGACAATTCTCACAAAATGACACTGTATTCAGAACAATTGATGCGATTTCCCAAGCA
521 CAAGAAAGAAACAATTCTCACAAAATGACACTGTATTCAGAACAATTGATGCGATTTCCCAAGCA
682 TAGAATGTTTGAAAATAGCA
586 TAGAATGTTTGAAAATAGCA
* * *
702 CGAAGGAATGGATCATCTAGAAATACTTTAAGGAATCGAAGTTAAAAAAGAACTCGTAAAAGTTT
1 CGAAGGAATGGATCATCTAG-AATACTTAAAGGAACCGAAGTTAAAAAAGAACACGTAAAAGTTT
* * **
767 GTCAA-GTCTGAAAGTTCAACCGAGAACCAAGAGGGAAGGAATAATGACCTAAATAAGTTTTTAA
65 GTCAACTTC-GAAAGTTCAACCGAGAACCAAGAGAGAAACAATAATGACCTAAATAAGTTTTTAA
* * * * *
831 TTCAAAGACCAAACGTTCTTTATAAAATGATAACTATTTAGAACAAATGATGTGATTTCTTAAGC
129 TTCAAAGACCAAAAGTTCTTTACAAAATGATAACTATTTAGAACAAATGATGCGAATTCTCAAGC
** * * *
896 ATGGGATGTTCGAAAAATTGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTAA
194 ATGAAATGATCGAAAAATTACTCAAAGGAATGGATAGTCTTAAATACTTTAAGGAACCGAAGTAA
** * * * * *
961 TAGTAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTAAGCCA-AGCACCAAGAGGTAAACTATT
259 TAAAAGAACACGTAAAAGTTTGTCAAGTTCAAAAGTT-AGCCATAGAACCAAGAGATAAACAATT
* * *
1025 CTCACCTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAATGACAAATATTTAGACC
323 CTAACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAATATTTAGACC
** * * *
1090 GAATAATTTGATTTCCTTAGCATGT-AA-TGT-TCGAAAAATTGCTTGAAGGAATGAATCATCTT
388 GAATAATGCGATTTCC-CA-AATGTGAACTGTAT-GAAAAATGGCTTGAAGGAATGAATCATCTT
* * *
1152 GAATGCTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCG-AAGTTCG-T
450 GAA-ACTTTAAGGAACAAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGAT
1215 CCAAGAACCAAGAAAGAAACAATTCTCACA
514 -CAAGAACCAAGAAAGAAACAATTCTCACA
1245 TAAAGAATTT
Statistics
Matches: 462, Mismatches: 73, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
605 22 0.05
606 383 0.83
607 53 0.11
608 4 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (605 bp):
CGAAGGAATGGATCATCTAGAATACTTAAAGGAACCGAAGTTAAAAAAGAACACGTAAAAGTTTG
TCAACTTCGAAAGTTCAACCGAGAACCAAGAGAGAAACAATAATGACCTAAATAAGTTTTTAATT
CAAAGACCAAAAGTTCTTTACAAAATGATAACTATTTAGAACAAATGATGCGAATTCTCAAGCAT
GAAATGATCGAAAAATTACTCAAAGGAATGGATAGTCTTAAATACTTTAAGGAACCGAAGTAATA
AAAGAACACGTAAAAGTTTGTCAAGTTCAAAAGTTAGCCATAGAACCAAGAGATAAACAATTCTA
ACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTACAAAATGACAAATATTTAGACCGAA
TAATGCGATTTCCCAAATGTGAACTGTATGAAAAATGGCTTGAAGGAATGAATCATCTTGAAACT
TTAAGGAACAAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGATCAAGAAC
CAAGAAAGAAACAATTCTCACAAAATGACACTGTATTCAGAACAATTGATGCGATTTCCCAAGCA
TAGAATGTTTGAAAATAGCA
Found at i:1354 original size:214 final size:214
Alignment explanation
Indices: 636--2315 Score: 1731
Period size: 214 Copynumber: 7.8 Consensus size: 214
626 GACAATTCTC
* * * * * *
636 ACAAAATGAC-ACTGTATTCAGAACAATTGATGCGATTTCCCAAGCATAGAATGTTTG-AAAATA
1 ACAAAATGACAAC--TATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTAGAAAAATT
* * * *
699 GCACGAAGGAATGGATCATCTAGAAATACTTTAAGGAATCGAAGTTAAAAAAGAACTCGTAAAAG
64 GCTCGAAGGAATGGATCATCTTG-AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* ** ** ** *
764 TTTGTCAAG-TCTGAAAGTTCAACCGAGAACCAAGAGGGAAGGAATAATGACCTAAATAAGTTTT
128 TTTGTCAAGTTC-GAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTT
*
828 TAATTCAAAGACCAAACGTTCTTT
192 TAATTCAAAGACCAAA-GTTGTTT
* * * * ** * *
852 ATAAAATGATAACTATTTAGAACAAATGATGTGATTTCTTAAGCATGGGATGTTCGAAAAATTGC
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTAGAAAAATTGC
* * **
917 TCAAAGGAATGGAT-AGTCTTGAATACTTTAAGGAACCGAAGTAATAGTAGAACTCGTAAAAGTT
66 TCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTT
* * * * *
981 TGTCAAGTTCGAAAGTT-AAGCCAAGCACCAAG-AGGTAAACTATTCTCACCTAAATAAGTTTTT
130 TGTCAAGTTCGAAAGTTCGA-CCGAGAACCAAGAAAG-AAACAATTCTCACCTAAATAAGTTTTT
*
1044 AATTCAAAGAGCAAAAGTTGTTT
193 AATTCAAAGA-CCAAAGTTGTTT
* * * ** ** * *
1067 ACAAAATGACAAATATTTAGACCGAATAATTTGATTTCCTTAGCATGTAATGTTCGAAAAATTGC
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTAGAAAAATTGC
* * * *
1132 TTGAAGGAATGAATCATCTTGAATGCTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
66 TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * *
1197 GTCAAGTTCG-AAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCACATAAAGAATTTTTTAAT
131 GTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAAT
*
1261 TCAAAGACCAAAGCTTATTT
196 TCAAAGACCAAAG-TTGTTT
* * * **
1281 ACAAAATGACAACTATTTATACCAAATGATGTGATTTCCCAAGCATGGATTGTTAGGGAAATTGC
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTAGAAAAATTGC
* * * * ** * * *
1346 TCGAAGGAATAGATCGTATTGAATAGTTTAAGGAACAAAAGTTATAAATGAACTGGTTAAAGTTT
66 TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * * *
1411 GTCAGGTTCGGAAGTTCGACCGAGAGCCAAGAAA-AAA-ATTTCTCACATAAATAACTTTTTAAT
131 GTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAAT
* * *
1474 TTAGAGACCAAAAGTTTTTT
196 TCAAAGACC-AAAGTTGTTT
* * * * *
1494 ACAAAATGACAATCTATTTAGAACAATTGATGCGATTT-CTAGGGCATGGAATGTTTGAAAAATT
1 ACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCCA-AGCATGGAATGTTAGAAAAATT
* * *
1558 GCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGATA-AAAAGGAACTCGTAAAAG
64 GCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAA-GAACTCGTAAAAG
* * * * * *
1622 TTTGTCAAGTTCGAAAGTTCGATCGAGAACCACGAGAGAAACTATTATCACCTAAATATGTTTTT
128 TTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTT
1687 AATTCAAAGACCAAAAGTTGTTT
193 AATTCAAAGACC-AAAGTTGTTT
* * *** * * *
1710 ACAAAATGACAACTATTTAGACCAAATTATGCAATTTCTTGAGAATGGAAAGTTA-AGAAATTTG
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTAGA-AAAATTG
* * *
1774 CTCGAAGGAATGGATCGTCTTGAATACTTAAAGGAACCGAAGTTATAAAATAACTCGTAAAAGTT
65 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTT
* * * * *
1839 TGTCAACTTCGAATGTTCGACCGTGAACCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAA
130 TGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAA
* *
1904 TTTAAAGATCAAAAGTTGTTT
195 TTCAAAGA-CCAAAGTTGTTT
* * * * * *
1925 AC-AAATGATAACTATTTAGATCAAATGATGCGAATTCTCAAGCATGAAATGATT-GAAAAATTA
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATG-TTAGAAAAATTG
* * * * * *
1988 CTCGAAGGAATGGATCGTATTAAATACTTTAAGGAACTGAAGTTATAAAAGACCACGTAAAAGTT
65 CTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTT
* * ** * * *
2053 TGTCAAGTTCAAAAGTTCGGCATAGAACCAAGAGATAAACAATTCTCACCTAAATATGTTTTTAA
130 TGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAA
* *
2118 TTCAAAGCCCAAAAGTAGTTT
195 TTCAAAGACC-AAAGTTGTTT
* * *
2139 GCAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCAA--ATGTGAACTG-TACGGAAAAT
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATG-GAA-TGTTA-GAAAAAT
* * * ** *
2201 GGCTTGAAGGAATGGATCATCTTGAA-ACTTTATGGAACAAAAGTAATAAAAGAACTCGTAAAAG
63 TGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
* * * *
2265 TTTGTCAAGTTCGAAAGTTCGATCGATAACCAAGAAACAGACAATTCTCAC
128 TTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCAC
2316 AAAATGACAC
Statistics
Matches: 1221, Mismatches: 213, Indels: 62
0.82 0.14 0.04
Matches are distributed among these distances:
213 62 0.05
214 550 0.45
215 514 0.42
216 93 0.08
217 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (214 bp):
ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCATGGAATGTTAGAAAAATTGC
TCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT
GTCAAGTTCGAAAGTTCGACCGAGAACCAAGAAAGAAACAATTCTCACCTAAATAAGTTTTTAAT
TCAAAGACCAAAGTTGTTT
Found at i:1642 original size:429 final size:429
Alignment explanation
Indices: 636--2299 Score: 1794
Period size: 429 Copynumber: 3.9 Consensus size: 429
626 GACAATTCTC
* * * *
636 ACAAAATGAC-ACTGTATTCAGAACAATTGATGCGATTTCCCAAGCATAGAATGTTTG-AAAATA
1 ACAAAATGACAAC--TATTTAGAACAATTGATGCGATTTCCTAAGCATGGAATGTTTGAAAAATT
* * *
699 GCACGAAGGAATGGATCATCTAGAAATACTTTAAGGAATCGAAGTTAAAAAAGAACTCGTAAAAG
64 GCACGAAGGAATGGATCATCTTG-AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
** * * ** * *
764 TTTGTCAAG-TCTGAAAGTTCAACCGAGAACCAAGAGGGAAGGAATAATGACCTAAATAA-GTTT
128 TTTGTCAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACCTAAA-AATGTTT
* * * * * * **
827 TTAATTCAAAGACCAAACGTTCTTTATAAAATGATAACTATTTAGAACAAATGATGTGATTTCTT
191 TTAATTCAAAGACCAAAAGTTATTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCC
* * * **
892 AAGCATGGGATGTTCGAAAAATTGCTCAAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAA
256 AAGCAT-GGATGTTAGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAA
* * * * **
957 GTAAT-AGTAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTT-AAGCCAAGCACCAAGAGGTAAA
320 GTAATAAAT-GAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGA-CCGAGAACCAAGAGAAAAA
* *
1020 CTATTCTCACCTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTT
383 CTATTCTCACCTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTT
* * * ** * * *
1067 ACAAAATGACAAATATTTAGACCGAA-TAATTTGATTTCCTTAGCATGTAATGTTCGAAAAATTG
1 ACAAAATGACAACTATTTAGAAC-AATTGATGCGATTTCCTAAGCATGGAATGTTTGAAAAATTG
** * * *
1131 CTTGAAGGAATGAATCATCTTGAATGCTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
65 CACGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTT
* * *
1196 TGTCAAGTTCG-AAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCACATAAAGAAT-TTTTTA
130 TGTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACCTAAA-AATGTTTTTA
* *
1259 ATTCAAAGACC-AAAGCTTATTTACAAAATGACAACTATTTATACCAAATGATGTGATTTCCCAA
194 ATTCAAAGACCAAAAG-TTATTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAA
** * * *
1323 GCATGGATTGTTAGGGAAATTGCTCGAAGGAATAGATCGTATTGAATAGTTTAAGGAACAAAAGT
258 GCATGGA-TGTTAGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGT
* * * * * * *
1388 TATAAATGAACTGGTTAAAGTTTGTCAGGTTCGGAAGTTCGACCGAGAGCCAAGA-AAAAAAT-T
322 AATAAATGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAAAAACTAT
* * * *
1451 TCTCACATAAATAACTTTTTAATTTAGAGACCAAAAGTTTTTT
387 TCTCACCTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTT
*
1494 ACAAAATGACAATCTATTTAGAACAATTGATGCGATTT-CTAGGGCATGGAATGTTTGAAAAATT
1 ACAAAATGACAA-CTATTTAGAACAATTGATGCGATTTCCTA-AGCATGGAATGTTTGAAAAATT
* *
1558 GCACGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGATA-AAAAGGAACTCGTAAAAG
64 GCACGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAA-GAACTCGTAAAAG
* * * *
1622 TTTGTCAAGTTCGAAAGTTCGAT-CGAGAACCACGAGAGAAACTATTATCACCTAAATATGTTTT
128 TTTGTCAAGTTCGAAAGTTCG-TCCAAGAACCAAGAGAGAAACAATTATCACCTAAAAATGTTTT
* * * ***
1686 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATTATGCAATTTCTTG
192 TAATTCAAAGACCAAAAGTTATTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCA
* * * * **
1751 AGAATGGAAAGTTA-AGAAATTTGCTCGAAGGAATGGATCGTCTTGAATACTTAAAGGAACCGAA
257 AGCATGG-ATGTTAGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAA
* * * * *
1815 GTTATAAAAT-AACTCGTAAAAGTTTGTCAACTTCGAATGTTCGACCGTGAACCAAGAGAGAAAC
320 GTAAT-AAATGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAAAAAC
*
1879 TATTCTCACCTAAATAAGTTTTTAATTTAAAGATCAAAAGTTGTTT
384 TATTCTCACCTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTT
* * * * * * *
1925 AC-AAATGATAACTATTTAGATCAAATGATGCGAATT-CTCAAGCATGAAATGATTGAAAAATTA
1 ACAAAATGACAACTATTTAGAACAATTGATGCGATTTCCT-AAGCATGGAATGTTTGAAAAATTG
* * * * * * *
1988 CTCGAAGGAATGGATCGTATTAAATACTTTAAGGAACTGAAGTTATAAAAGACCACGTAAAAGTT
65 CACGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTT
* * * * *
2053 TGTCAAGTTCAAAAGTTCG-GCATAGAACCAAGAGATAAACAATTCTCACCTAAATATGTTTTTA
130 TGTCAAGTTCGAAAGTTCGTCCA-AGAACCAAGAGAGAAACAATTATCACCTAAAAATGTTTTTA
* * *
2117 ATTCAAAGCCCAAAAG-TAGTTTGCAAAATGACAACTATTTAGACCTAATGATGCGATTTCCCAA
194 ATTCAAAGACCAAAAGTTA-TTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAA
* * * * *
2181 --ATGTGAACTG-TACGGAAAATGGCTTGAAGGAATGGATCATCTTGAA-ACTTTATGGAACAAA
258 GCATG-G-A-TGTTA-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAA
* * *
2242 AGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGATCGATAACCAAGA
319 AGTAATAAATGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGA
2300 AACAGACAAT
Statistics
Matches: 1028, Mismatches: 173, Indels: 67
0.81 0.14 0.05
Matches are distributed among these distances:
427 64 0.06
428 178 0.17
429 598 0.58
430 108 0.11
431 79 0.08
432 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (429 bp):
ACAAAATGACAACTATTTAGAACAATTGATGCGATTTCCTAAGCATGGAATGTTTGAAAAATTGC
ACGAAGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT
GTCAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACCTAAAAATGTTTTTAAT
TCAAAGACCAAAAGTTATTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCCAAGCA
TGGATGTTAGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTAATA
AATGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAACCAAGAGAAAAACTATTCTC
ACCTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTT
Found at i:2690 original size:215 final size:215
Alignment explanation
Indices: 2341--3996 Score: 1556
Period size: 215 Copynumber: 7.7 Consensus size: 215
2331 TCTGAACAAT
* * * * * *
2341 TGATGCGA-TTCCCAAGCATAGAATGTTTG-AAAATTACACGAAAGAATGGATCA-TCTTGAAAT
1 TGATGCGATTTCTCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGAT-AGTCTTG-AAT
* *
2403 ACTTTAAGGAACCAAAGTTAA-AAAAGAACTCGTAAAAGTTTGTCATGTTCTAAAGTTCAA-CCG
64 ACTTTAAGGAACCAAAG-TAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTT-AAGCCG
* ** ** * * *
2466 AGAACCAAGAGGGAAGGAATAATCACCTAAATAAGTTTTTAATTCAAAGACCAAATGTTCTTTAT
127 AGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* *
2531 AAAATGATAACTATTTAGAACAAA
192 AAAATGACAACTATTTAGACCAAA
* * *
2555 TGATGTGATTTCTTAAGCATGGGATGTTCGAAAAATTGCTCGAAGGAATGGATAGTCTTGAATAC
1 TGATGCGATTTCTCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATAGTCTTGAATAC
* * *
2620 TTTAAGGAACCAAAGTAATAATAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTAAGCCAAGCA
66 TTTAAGGAACCAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTAAGCCGAGAA
* * * *
2685 CCAAGAGGGAAACTATTGTCACCTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACAAAA
131 CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
* * *
2750 TGAAAAATATTTAGACCGAA
196 TGACAACTATTTAGACCAAA
* ** * * * *
2770 TAATTTGATTTC-CTTAGCATGTAATGTTTCGAAAAACTGCTTGAAGGAAT-GACTCA-TCTTGA
1 TGATGCGATTTCTC-AAGCATGGAATG-TTCGAAAAATTGCTCGAAGGAATGGA-T-AGTCTTGA
* ** * * *
2832 ATACTTTAAGAAACTGAAGTTATAAAAGAACTTGTAAAAGTTTGTCAAGTTCG-AAGTTCAGCCG
62 ATACTTTAAGGAACCAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTAAGCCG
* * * * ** * * *
2896 AGAACCAAGAAAGAAACAATTCTCACATAAAGAATTTTTTAAACCAAAGACCAAAACTTATTTTC
127 AGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
*
2961 AAAATGACAACTATTTATACCAAA
192 AAAATGACAACTATTTAGACCAAA
** * * ** * * *
2985 TGATTAGATTTCCCAAGCATGGACTGTTCGGGAAATTGCTCGAAGGAATAGATCGTCTTGAACAC
1 TGATGCGATTTCTCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATAGTCTTGAATAC
* * * * * * * * *
3050 TTTAAGGAACAAAAGTTATAAAAGAACTCATTAAAGTTTGTCAGGTTCGGAAGTT-CGATCAAGA
66 TTTAAGGAACCAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTAAG-CCGAGA
* * * * * *
3114 ACAAAGACAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGGTTTTTTACAA
130 ACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAA-GTTGTTTACAA
* *
3179 AATGACAATCTATTTAGAACAAT
194 AATGACAA-CTATTTAGACCAAA
* ** * * * * *
3202 TGATGCCATTTCTCGGGCGTGGAATGTTTGAAAAATGGCACGAAGGAATGGATCGTCTTGAATAC
1 TGATGCGATTTCTCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATAGTCTTGAATAC
* * * * **
3267 TTTAAGGAACCGAAGT--TAAAATGGAACTCGTAAAAGTTTGTCAAGTTTG-GATTTTCGACCGA
66 TTTAAGGAACCAAAGTAATAAAA--GAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTAAG-CCGA
* ** * * *
3329 GAACTAAGAGAGAAACTGTTATCACCTAAATAAGCTTTTAATTTAAAGACCAAAAGTTGTTTACA
128 GAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
3394 AAATGACAACTATTTAGACCAAA
193 AAATGACAACTATTTAGACCAAA
* ** * * *
3417 TTATGCGATTTCTTGAGAATTGAATGTT--AAGAAATTTGCTCGAAGGAATGGATCA-TTTTGAA
1 TGATGCGATTTCTCAAGCATGGAATGTTCGAA-AAA-TTGCTCGAAGGAATGGAT-AGTCTTGAA
* * * **
3479 TACTTAAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTGTCAACTTCGAAAGTTTGGCCG
63 TACTTTAAGGAACCA-AAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTAAGCCG
* * * * * *
3543 TGAACCGAGAGAGAAACTATTCTCATCTAAATAAGTTTTTAATTTAAAGATCAAAAGTTGTTTAC
127 AGAACCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* *
3608 AAAATGATAACTATTTAAACCAAA
192 AAAATGACAACTATTTAGACCAAA
* * * * * *
3632 TGATGCGATTTCTCGAGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGGATCGGCTTAAATAC
1 TGATGCGATTTCTCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATAGTCTTGAATAC
* ** * * * **
3697 -TTCAGGAACTGAAGTTATAAAAGAACACGTAAATGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
66 TTTAAGGAACCAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTAAGCCGAGAA
* * * * * * *
3761 CAAAGAGAAAAACAATTCTCACCTAAACATGTTTTTAATTCAAAG-CCTAAAAGTAGTCTGCAAA
131 CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAA
*
3825 ATGACAACTATTTAGACCTAA
195 ATGACAACTATTTAGACCAAA
* * * * * * * * *
3846 TGATGCGGTTTCCCAAACGT-GAACTGTACGGAAAATGGCTTGAAGGAATGGATCGTCTTGAA-A
1 TGATGCGATTTCTCAAGCATGGAA-TGTTCGAAAAATTGCTCGAAGGAATGGATAGTCTTGAATA
* * * * *
3909 CTTTAAGGAACAAAAGTAATAAAAGAACTCTTAAAAGTTTGTCAAGTTTGGAAGTT-CGACCGAG
65 CTTTAAGGAACCAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTAAG-CCGAG
* *
3973 AACCAAGAAAGAGACAATTCTCAC
129 AACCAAGAGAGAAACAATTCTCAC
3997 AAAATGACAC
Statistics
Matches: 1189, Mismatches: 219, Indels: 68
0.81 0.15 0.05
Matches are distributed among these distances:
213 8 0.01
214 326 0.27
215 553 0.47
216 145 0.12
217 157 0.13
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (215 bp):
TGATGCGATTTCTCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATAGTCTTGAATAC
TTTAAGGAACCAAAGTAATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGAAAGTTAAGCCGAGAA
CCAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
TGACAACTATTTAGACCAAA
Found at i:3567 original size:647 final size:642
Alignment explanation
Indices: 2341--3980 Score: 1825
Period size: 647 Copynumber: 2.5 Consensus size: 642
2331 TCTGAACAAT
* ** * * * *
2341 TGATGCGA-TTCCCAAGCAT-AGAATGTT-TGAAAATTACACGAAAGAATGGATCATCTTGAAAT
1 TGATGAGATTTCCCAAGCATGA-AATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTG-AAT
* * * * * *
2403 ACTTTAAGGAACCAAAGTTAAAAAAGAACTCGTAAAAGTTTGTCATGTTCTAAAGTTCAACCGAG
64 ACTTTAAGGAACAAAAGTTATAAAAGAACTC-TTAAAGTTTGTCAAGTTCGAAAGTTCGACCGAG
* * ** ** * *
2468 AACCAAGAGGGAAGGAATAATCACCTAAATAAGTTTTTAATTCAAAGACCAAATGTTCTTTATAA
128 AACAAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTCTTTACAA
* * * * * *
2533 AATGATAACTATTTAGAACAAATGATGTGATTTCTTAAGCATGGGATGTTCGAAAAATTGCTCGA
193 AATGACAACTATTTAGAAC-AATGATGCGATTTCTCAAGCGTGGAATGTTCGAAAAATGGCTCGA
*
2598 AGGAATGGATAGTCTTGAATACTTTAAGGAACCAAAG-TAATAATAGAACTCGTAAAAGTTTGTC
257 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAA-AAT-GAACTCGTAAAAGTTTGTC
* * * * * * * *
2662 AAGTTCGAAAGTT-AAGCCAAGCACCAAGAGGGAAACTATTGTCACCTAAATAAGTTTTTAATTC
320 AAGTTTGGAAGTTCGA-CCGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGCTTTTAATTC
* * ** *
2726 AAAGAGCAAAAGTTGTTTACAAAATGAAAAATATTTAGACCGAATAATTTGATTTCCTTAGCATG
384 AAAGACCAAAAGTTGTTTACAAAATGAAAAATATTTAGACCAAATAATGCGATTTCCTTAGAATG
** * * *
2791 TAATGTTTCGAAAAACTGCTTGAAGGAATGACTCATCTTGAATACTTTAAGAAACTGAAGTTATA
449 TAATGTTAAGAAAAACTGCTCGAAGGAATGACTCATCTTGAATACTTAAAGAAACAGAAGTTATA
* *
2856 AAAGAACTTGTAAAAGTTTGTCAAGTTCGAAGTTCAGCCGAGAACCAAGAAAGAAACAATTCTCA
514 AAAGAACTCGTAAAAGTTTGTCAACTTCGAAGTTCAGCCGAGAACCAAGAAAGAAACAATTCTCA
* * *
2921 -CATAAAGAATTTTTTAAACCAAAGACCAAAACTTATTTTCAAAATGACAACTATTTATACCAAA
579 TC-TAAAGAAGTTTTTAAACCAAAGACCAAAACTTATTTACAAAATGACAACTATTTAAACCAAA
* * * *** * *
2985 TGATTAGATTTCCCAAGCATGGACTGTTCGGGAAATTGCTCGAAGGAATAGATCGTCTTGAACAC
1 TGATGAGATTTCCCAAGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* * * *
3050 TTTAAGGAACAAAAGTTATAAAAGAACTCATTAAAGTTTGTCAGGTTCGGAAGTTCGATCAAGAA
66 TTTAAGGAACAAAAGTTATAAAAGAACTC-TTAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAA
* * * * *
3115 CAAAGACAGAAACAATTCTCACATAAATAACTTTTTAATTTAAAGACCAAAAGGTTTTTTACAAA
130 CAAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAA-GTTCTTTACAAA
* ** * *
3180 ATGACAATCTATTTAGAACAATTGATGCCATTTCTCGGGCGTGGAATGTTTGAAAAATGGCACGA
194 ATGACAA-CTATTTAGAACAA-TGATGCGATTTCTCAAGCGTGGAATGTTCGAAAAATGGCTCGA
*
3245 AGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAATGGAACTCGTAAAAGTTTGTCA
257 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAAT-GAACTCGTAAAAGTTTGTCA
** * * *
3310 AGTTTGGATTTTCGACCGAGAACTAAGAGAGAAACTGTTATCACCTAAATAAGCTTTTAATTTAA
321 AGTTTGGAAGTTCGACCGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGCTTTTAATTCAA
* * *
3375 AGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATTATGCGATTT-CTTGAGAAT-T
386 AGACCAAAAGTTGTTTACAAAATGAAAAATATTTAGACCAAATAATGCGATTTCCTT-AGAATGT
** * *
3438 GAATGTTAAG-AAATTTGCTCGAAGGAATGGA-TCATTTTGAATACTTAAAGGAACAGAAGTTAT
450 -AATGTTAAGAAAAACTGCTCGAAGGAAT-GACTCATCTTGAATACTTAAAGAAACAGAAGTTAT
** * * * *
3501 AAAAGAACTCGTAAAAGTTTGTCAACTTCGAAAGTTTGGCCGTGAACCGAGAGAGAAACTATTCT
513 AAAAGAACTCGTAAAAGTTTGTCAACTTCG-AAGTTCAGCCGAGAACCAAGAAAGAAACAATTCT
* *** * * * *
3566 CATCTAAATAAGTTTTTAATTTAAAGATCAAAAGTTGTTTACAAAATGATAACTATTTAAACCAA
577 CATCTAAAGAAGTTTTTAAACCAAAGACCAAAACTTATTTACAAAATGACAACTATTTAAACCAA
3631 A
642 A
* * * * *
3632 TGATGCGATTTCTCGAGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGGATCGGCTTAAATAC
1 TGATGAGATTTCCCAAGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
* ** * * *
3697 -TTCAGGAACTGAAGTTATAAAAGAACACGTAAATGTTTGTCAAGTTCGAAAGTTCGGCCGAGAA
66 TTTAAGGAACAAAAGTTATAAAAGAACTCTTAAA-GTTTGTCAAGTTCGAAAGTTCGACCGAGAA
* * * ** * *
3761 CAAAGAGAAAAACAATTCTCACCTAAACATGTTTTTAATTCAAAG-CCTAAAAGTAGTCTGCAAA
130 CAAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTCTTTACAAA
* * * * * * *
3825 ATGACAACTATTTAGACCTAATGATGCGGTTTCCCAAACGT-GAACTGTACGGAAAATGGCTTGA
194 ATGACAACTATTTAGAAC-AATGATGCGATTTCTCAAGCGTGGAA-TGTTCGAAAAATGGCTCGA
* *
3889 AGGAATGGATCGTCTTGAA-ACTTTAAGGAACAAAAGTAATAAAA-GAACTCTTAAAAGTTTGTC
257 AGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGT--TAAAATGAACTCGTAAAAGTTTGTC
3952 AAGTTTGGAAGTTCGACCGAGAACCAAGA
320 AAGTTTGGAAGTTCGACCGAGAACCAAGA
3981 AAGAGACAAT
Statistics
Matches: 827, Mismatches: 150, Indels: 39
0.81 0.15 0.04
Matches are distributed among these distances:
643 63 0.08
644 63 0.08
645 144 0.17
646 208 0.25
647 344 0.42
648 5 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (642 bp):
TGATGAGATTTCCCAAGCATGAAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATAC
TTTAAGGAACAAAAGTTATAAAAGAACTCTTAAAGTTTGTCAAGTTCGAAAGTTCGACCGAGAAC
AAAGAGAGAAACAATTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTCTTTACAAAAT
GACAACTATTTAGAACAATGATGCGATTTCTCAAGCGTGGAATGTTCGAAAAATGGCTCGAAGGA
ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTAAAATGAACTCGTAAAAGTTTGTCAAGTTT
GGAAGTTCGACCGAGAACCAAGAGAGAAACTATTATCACCTAAATAAGCTTTTAATTCAAAGACC
AAAAGTTGTTTACAAAATGAAAAATATTTAGACCAAATAATGCGATTTCCTTAGAATGTAATGTT
AAGAAAAACTGCTCGAAGGAATGACTCATCTTGAATACTTAAAGAAACAGAAGTTATAAAAGAAC
TCGTAAAAGTTTGTCAACTTCGAAGTTCAGCCGAGAACCAAGAAAGAAACAATTCTCATCTAAAG
AAGTTTTTAAACCAAAGACCAAAACTTATTTACAAAATGACAACTATTTAAACCAAA
Found at i:4657 original size:216 final size:215
Alignment explanation
Indices: 3995--7481 Score: 3752
Period size: 215 Copynumber: 16.2 Consensus size: 215
3985 GACAATTCTC
* * * * * * * * * *
3995 ACAAAATGACACTCTATTCAGAACAATTGATGCAATTCCCCAACCATGGGATGTTTGAAAAATTG
1 ACAAAATGACA-ACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTG
* * * * * *
4060 CACGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAGAAAAGAACTCGTAAAGGTT
65 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
* * * *
4125 TGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGGGAAACTATTAC-CACTTAAATAAGTTTTTA
130 TGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATT-CTCACATAAATAAGTTTTTA
* *
4189 ATTCAAAGATCAAAAGTTCTTT
194 ATTCAAAGACCAAAAGTTGTTT
* * * * * *
4211 ATAAAATGATAACTATTTAGAGCAAATGATGTGATTTCCTAAGCATGGGATGTTCAAAAAATTGC
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGC
** * * * *
4276 TCGAAGGTTTGTATCGTCTTGAATACTTTAAGGAACCGAAGTAATAATAGAACTCGTAAAAGTTT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * * * *
4341 TTCAAGGTCGGAAGTT-AAGCCAAGCAGCAAGAGAGAAACTATTCTCACCTAAATAAGTTTTTAA
131 GTCAAGTTCGGAAGTTCAA-CCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
*
4405 TTCAAAGAACAAAAGTTGTTT
195 TTCAAAGACCAAAAGTTGTTT
* * * *
4426 ACAAAATGACAACTATTTAGACCAAATAATTCGATTTCCTTAGCATGGAATGTTTGTGAAAAATT
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATG-TT-CGAAAAATT
* * * * *
4491 GCTTGAAGGAATGAATCGTCTTGAATGCTTTAAGGAACCGAAGTTATAAGAGAACTCGTAAAAGT
64 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGT
* * * * * * *
4556 TTGTCAGGTTC-AAAGTTCGACCGAGAAGCAAGAAACAAACAATTCTCGCATAAATAAGTTTTTA
129 TTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
*
4620 CTTCAAAGACCAAAAGTTGTTT
194 ATTCAAAGACCAAAAGTTGTTT
* * *
4642 ACAAAATGGCAACTATTTAGACCAAATGATGCGATTTCCTTAGCATGGAATGTTTGAAAAATTGC
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGC
* * ** * *
4707 TCGAAAGATTAAATCGTCTTGAATATTTTAAGGAA-CAGAAGTTATAAAAGAACTCATAAAAGTT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTT
* * * * *
4771 TGTCAGGTTCGGAAGTCCAACCGAGAACCAAGAAAGAAACAATTCTCACAGAAAGAA-TTTTTAA
130 TGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT-A
** *
4835 ATTCAAAGACCAAAAACATATTT
194 ATTCAAAGACC-AAAAGTTGTTT
* ** * * *
4858 ACAAAATGACAACTATTTATACCAAATGATTTGATTTCCCAAGCATGCAATGTTCCAAAAATTGC
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGC
* * *
4923 TCGAAGGAATGAAGCGTCTTGAATACTTAAAGGTAA-CAAAGTTATAAAAGAACTCGTAAAAGTT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGG-AACCAAAGTTATAAAAGAACTCGTAAAAGTT
* * **
4987 TGTCAACTTC-GAATGTTCAACCGTGAACCAAGAGAGAAACTGTTCTCAC--AAATAAGTTTTTA
130 TGTCAAGTTCGGAA-GTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
* *
5049 ATTTAGAGACCAAAAGTTGTTT
194 ATTCAAAGACCAAAAGTTGTTT
* * * *
5071 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTTGAGCATGGAATGTTCAAAAAATTTC
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGC
* ** * *
5136 TCGAAGGAATGGATCGTCTTAAATACTTTCTGGAACTAAAGTTATAAAAGAACTCATAAAAGTTT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * *
5201 GTCAAGTTCGAAAGTTCAATCGAGAACCAAGAGAGAAATAATTCTCACCTAAATAGGTTTTTAAT
131 GTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
*
5266 TCAAAGCCCAAAAGTTGTTT
196 TCAAAGACCAAAAGTTGTTT
** * * * * *
5286 ACAAAATGGTAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTATAG-AAAA-TG
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGT-TCGAAAAATTG
* * * * *
5349 ACTTGAAGGAATGGATCGTCTTGAATAATTTAAGGAACAAAAGTAATAAAAGAAGTCGTAAAAGT
65 -CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGT
* * * * * * ** * * * *
5414 TTATCAAGTTCAGAAGTTCGACCGATAACCAGGATAGAGTCGATTGTCACACAAATAATTTTTTA
129 TTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
* * *
5479 TTTTAAAGACCAAAAGTTTTTT
194 ATTCAAAGACCAAAAGTTGTTT
* * * * * * *
5501 ACAAAATGACACTCTATTCAGAACAATTGATGCGATTTTCGAAGCATAGAATGTT-GAAAAAGTT
1 ACAAAATGACA-ACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAA-TT
** * * *
5565 ATTCGAAGGAATAGG-TCATCTTGAATACTTTAAGGAACCAAAATTCA-AGAAGAACTCGTAAAA
64 GCTCGAAGGAAT-GGATCGTCTTGAATACTTTAAGGAACCAAAGTT-ATAAAAGAACTCGTAAAA
* ** * * * * *
5628 GTTTGTCAAGTTTGGAAGTTCGGCCGAGAACCAAGAGGGAAACTATTATCACTTAAAGGAA-TTT
127 GTTTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAA-TAAGTTT
* *
5692 TTAATTTAAAGACCAAAAGTTGTTC
191 TTAATTCAAAGACCAAAAGTTGTTT
* * * * *
5717 ACAAAATAACAACTATTTAGACCAAATGATTC-ATTTCCCAAGAATGGAATATTCTG--AAATTG
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGTTC-GAAAAATTG
* *
5779 CTTGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTT
65 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
* ** * * *
5844 TGTCAAGTTCGGAAGTTCGAGAGAGAACCAAGAAAGAAATAATTCTCACATAAATAACTTTTTAA
130 TGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* *
5909 TTTAAAAACCAAAAGTTGTTCT
195 TTCAAAGACCAAAAGTTGTT-T
* * * * **
5931 ACAAAATGACAACTGTTTAGAACAATTTATGCGATTTTCC-AAGCATGGAATGTTCGGTAAATTG
1 ACAAAATGACAACTATTTAGACCAAATGATGCGA-TTTCCTAAGCATGGAATGTTCGAAAAATTG
** * * * *
5995 GACGAAGGAATGGGTCGTATTGCATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTT
65 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
** * * * * *
6060 TGTCAAGTTCATAAGTCCAACTGATAACCAAGAGAGAAACAATTCTCACATAAATAACTTTTTAT
130 TGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* *
6125 TTTAAAGACCAAAAGTTTTTTT
195 TTCAAAGACCAAAAG-TTGTTT
* * * * *
6147 ACAAAATGAC-ACTATATTCAGAACAATTGATGTGATTTCCCAAGCATGGAATGTTAGAAAAATT
1 ACAAAATGACAACTAT-TT-AGACCAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATT
* * * * * *
6211 GCACGAAGGAATTGATCGTCTTGAATACTTTAAGGAATCGATGTTAAAAAAGAACTCGTAAAAGT
64 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGT
* * * * * *
6276 TTGTCAAGTTCGGAAGTTCAGCCGAGAACCAAGAGGGAAACTATTATCACTTAAATAAGTTTATA
129 TTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
*
6341 ATTCAAAGACCAAAAGTTATTT
194 ATTCAAAGACCAAAAGTTGTTT
* * * * * *
6363 ATAAAATGATAACTATTTAGAACAAATGATGTGATTTCCTAGGCATGGGATGTTCGAAAAA---C
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGC
* * * *
6425 TCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGTTAGAATAGAACTCGTAAAAGTTT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * * *
6490 GTCAAGTTCAGAAGTT-AAGCCAAGCACCAAGGGAGAAACTATTCTCACCTAAATAAGTTTTTAA
131 GTCAAGTTCGGAAGTTCAA-CCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
6554 TTCAAAGACCAAAAGTTGTTT
195 TTCAAAGACCAAAAGTTGTTT
* * * *
6575 ACAAAATGGCAACTATTTAGACCAAATGATGCGATTTCCTTACCATGGAATGTTTGAAAAATTGC
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGC
* ** *
6640 TCGAAGGATTAAATCGTCTTCAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT-AAAGTTT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * * *
6704 GTCAGGTT-TGAAGTTCGACAGAGAAGCAAGAAAGAAACAATTCTCACATAAATAA-TTTTTGAA
131 GTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT-AA
* * *
6767 TTCAAAGACCGAAACTTTTTT
195 TTCAAAGACCAAAAGTTGTTT
* ** * * *
6788 ACAAAATGACAACTATTTATACCAAATGATTTGATTTCCCAAGCATGCAATATTTCG-AAAATTG
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAAT-GTTCGAAAAATTG
* * ** *
6852 CTCGAAGGAATGAAGCGTCTTGAATACTTTAAGGAAAAAAAGTTATAAAAGAACTCGTTAAAGTT
65 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
* * * * * *
6917 TGTCAGGTTCGGAAGTTCGACCGAAAACCAAGAAAGAAACAATTCTCATATAAATAACTTTTTAA
130 TGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* * * *
6982 TTTAAATAACAAAAGTTTTTT
195 TTCAAAGACCAAAAGTTGTTT
* * **
7003 ACAAAATGACAATCTATTTAG-CACAATTAATGCGATTT-CTCGGCATGGAATGTTCGAAAAATT
1 ACAAAATGACAA-CTATTTAGAC-CAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATT
* * * *
7066 ACAT-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTTGTAAAAG
64 GC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAG
* * ** * *
7130 TTTGTCAGGTTC-GAAGTTCAGCCGAGAAGTAAGAAAGAAACAATTCTCACATAAAGAAGTTTTT
128 TTTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
7194 AATTCAAAGACCAAAAGTTGTTT
193 AATTCAAAGACCAAAAGTTGTTT
* * * ** *
7217 ACAAAATGACAAATATTTATACCAAATGATGAGATTTCC--CCCTGTGGAATGTTCGAAAAATTG
1 ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGC-ATGGAATGTTCGAAAAATTG
* *
7280 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTTAAAGTT
65 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
* * * *
7345 TGTCAGGTTCGAAAGTTCAACCGAGAACCAAGAAAGAAACTATTCTCACATAAATAA-TTTTTAA
130 TGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* * ** *
7409 TTTAAAGAGCAAATTTTTTTT
195 TTCAAAGACCAAAAGTTGTTT
* * * *
7430 ACAAAATGACAATCTATTTAGAACAATTAATGCGATTT-CTCAGGCATGGAAT
1 ACAAAATGACAA-CTATTTAGACCAAATGATGCGATTTCCT-AAGCATGGAAT
7482 ATGGTGTGAG
Statistics
Matches: 2748, Mismatches: 460, Indels: 127
0.82 0.14 0.04
Matches are distributed among these distances:
211 1 0.00
212 197 0.07
213 580 0.21
214 319 0.12
215 769 0.28
216 633 0.23
217 249 0.09
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
ACAAAATGACAACTATTTAGACCAAATGATGCGATTTCCTAAGCATGGAATGTTCGAAAAATTGC
TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
GTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
TCAAAGACCAAAAGTTGTTT
Found at i:5124 original size:429 final size:428
Alignment explanation
Indices: 3995--7481 Score: 3684
Period size: 429 Copynumber: 8.1 Consensus size: 428
3985 GACAATTCTC
* * * * ** * * *
3995 ACAAAATGACACTCTATTCAGAACAATTGATGCAATTCCCCAACCATGGGATGTTTGAAAAATTG
1 ACAAAATGACA-ACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATG-TTGAAAAATTG
* * * * * *
4060 CACGAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAGAAAAGAACTCGTAAAGGTT
64 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
**
4125 TGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAGGGAAACTATTAC-CACTTAAATAAGTTTTTA
129 TGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACTATT-CTCAC-TAAATAAGTTTTTA
* * * * * * *
4189 ATTCAAAGATCAAAAGTTCTTTATAAAATGATAACTATTTAGAGCAAATGATGTGATTTCCTAAG
192 ATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTTAAG
* * ** * ** *
4254 CATGGGATGTTCAAAAAATTGCTCGAAGGTTTGTATCGTCTTGAATACTTTAAGGAACCGAAGTA
257 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTT
* * * * * * *
4319 ATAATAGAACTCGTAAAAGTTTTTCAAGGTCGGAAGTT-AAGCCAAGCAGCAAGAGAGAAACTAT
322 ATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCAA-CCGAGAACCAAGAGAGAAACAAT
* * *
4383 TCTCACCTAAATAAGTTTTTAATTCAAAGAACAAAAGTTGTTT
386 TCTCACATAAATAACTTTTTAATTCAAAGACCAAAAGTTGTTT
* **
4426 ACAAAATGACAACTATTTAGACCAAATAAT-TCGATTTCCTTAGCATGGAATGTTTGTGAAAAAT
1 ACAAAATGACAACTATTTAGACCAAATGATGT-GATTTCCCAAGCATGGAATG--T-TGAAAAAT
* * * * *
4490 TGCTTGAAGGAATGAATCGTCTTGAATGCTTTAAGGAACCGAAGTTATAAGAGAACTCGTAAAAG
62 TGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAG
* * * * * *
4555 TTTGTCAGGTTC-AAAGTTCGACCGAGAAGCAAGAAACAAACAATTCTCGCATAAATAAGTTTTT
127 TTTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACTATTCTCAC-TAAATAAGTTTTT
* *
4619 ACTTCAAAGACCAAAAGTTGTTTACAAAATGGCAACTATTTAGACCAAATGATGCGATTTCCTT-
191 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTT-CTTA
* * * ** * *
4683 AGCATGGAATGTTTGAAAAATTGCTCGAAAGATTAAATCGTCTTGAATATTTTAAGGAACAGAAG
255 AGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAG
* * * *
4748 TTATAAAAGAACTCATAAAAGTTTGTCAGGTTCGGAAGTCCAACCGAGAACCAAGAAAGAAACAA
320 TTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAA
* * ** *
4813 TTCTCACAGAAAGAA-TTTTTAAATTCAAAGACCAAAAACATATTT
385 TTCTCACATAAATAACTTTTT-AATTCAAAGACC-AAAAGTTGTTT
* * * *
4858 ACAAAATGACAACTATTTATACCAAATGATTTGATTTCCCAAGCATGCAATGTTCCAAAAATTGC
1 ACAAAATGACAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTT-GAAAAATTGC
* * *
4923 TCGAAGGAATGAAGCGTCTTGAATACTTAAAGGTAA-CAAAGTTATAAAAGAACTCGTAAAAGTT
65 TCGAAGGAATGGATCGTCTTGAATACTTTAAGG-AACCAAAGTTATAAAAGAACTCGTAAAAGTT
* * * * *
4987 TGTCAACTTC-GAATGTTCAACCGTGAACCAAGAGAGAAACTGTTCTCAC-AAATAAGTTTTTAA
129 TGTCAAGTTCGGAA-GTTCGACCGAGAACCAAGAAAGAAACTATTCTCACTAAATAAGTTTTTAA
* * *
5050 TTTAGAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTTGAGC
193 TTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTTAAGC
* * * ** *
5115 ATGGAATGTTCAAAAAATTTCTCGAAGGAATGGATCGTCTTAAATACTTTCTGGAACTAAAGTTA
258 ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTA
* * * *
5180 TAAAAGAACTCATAAAAGTTTGTCAAGTTCGAAAGTTCAATCGAGAACCAAGAGAGAAATAATTC
323 TAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTC
* ** *
5245 TCACCTAAATAGGTTTTTAATTCAAAGCCCAAAAGTTGTTT
388 TCACATAAATAACTTTTTAATTCAAAGACCAAAAGTTGTTT
** * *
5286 ACAAAATGGTAACTATTTAGACCTAATGATGTGATTTCCCAAGCATGGACTGTAT-AGAAAA-TG
1 ACAAAATGACAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGT-TGA-AAAATTG
* * * * *
5349 ACTTGAAGGAATGGATCGTCTTGAATAATTTAAGGAACAAAAGTAATAAAAGAAGTCGTAAAAGT
64 -CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGT
* * * * * ** * * * *
5414 TTATCAAGTTCAGAAGTTCGACCGATAACCAGGATAGAGTCGATTGTCACACAAATAATTTTTTA
128 TTGTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACTATTCTCAC-TAAATAAGTTTTTA
* * * * * * * *
5479 TTTTAAAGACCAAAAGTTTTTTACAAAATGACACTCTATTCAGAACAATTGATGCGATTT-TCGA
192 ATTCAAAGACCAAAAGTTGTTTACAAAATGACA-ACTATTTAGACCAAATGATGCGATTTCT-TA
* ** *
5543 AGCATAGAATGTT-GAAAAAGTTATTCGAAGGAATAGG-TCATCTTGAATACTTTAAGGAACCAA
255 AGCATGGAATGTTCGAAAAA-TTGCTCGAAGGAAT-GGATCGTCTTGAATACTTTAAGGAA-CAA
* * ** *
5606 AA-TTCA-AGAAGAACTCGTAAAAGTTTGTCAAGTTTGGAAGTTCGGCCGAGAACCAAGAGGGAA
317 AAGTT-ATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAA
* * * * * *
5669 ACTATTATCACTTAAAGGAA-TTTTTAATTTAAAGACCAAAAGTTGTTC
381 ACAATTCTCACATAAA-TAACTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * ***
5717 ACAAAATAACAACTATTTAGACCAAATGAT-TCATTTCCCAAGAATGGAATATTCTGAAATTGCT
1 ACAAAATGACAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTGAAAAATTGCT
* *
5781 TGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAAAAGAACTCGTAAAAGTTTG
66 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
** *
5846 TCAAGTTCGGAAGTTCGAGAGAGAACCAAGAAAGAAA-TAATTCTCACATAAATAACTTTTTAAT
131 TCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACT-ATTCTCAC-TAAATAAGTTTTTAAT
* * * * * * *
5910 TTAAAAACCAAAAGTTGTTCTACAAAATGACAACTGTTTAGAACAATTTATGCGATTT-TCCAAG
194 TCAAAGACCAAAAGTTGTT-TACAAAATGACAACTATTTAGACCAAATGATGCGATTTCT-TAAG
** ** * * *
5974 CATGGAATGTTCGGTAAATTGGACGAAGGAATGGGTCGTATTGCATACTTTAAGGAACAAAAGTT
257 CATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTT
** * * *
6039 ATAAAAGAACTCGTAAAAGTTTGTCAAGTTCATAAGTCCAACTGATAACCAAGAGAGAAACAATT
322 ATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATT
* * *
6104 CTCACATAAATAACTTTTTATTTTAAAGACCAAAAGTTTTTTT
387 CTCACATAAATAACTTTTTAATTCAAAGACCAAAAG-TTGTTT
* *
6147 ACAAAATGAC-ACTATATTCAGAACAATTGATGTGATTTCCCAAGCATGGAATGTTAGAAAAATT
1 ACAAAATGACAACTAT-TT-AGACCAAATGATGTGATTTCCCAAGCATGGAATGTT-GAAAAATT
* * * * * *
6211 GCACGAAGGAATTGATCGTCTTGAATACTTTAAGGAATCGATGTTAAAAAAGAACTCGTAAAAGT
63 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGT
** * *
6276 TTGTCAAGTTCGGAAGTTC-AGCCGAGAACCAAGAGGGAAACTATTATCACTTAAATAAGTTTAT
128 TTGTCAAGTTCGGAAGTTCGA-CCGAGAACCAAGAAAGAAACTATTCTCAC-TAAATAAGTTTTT
* * * * * * *
6340 AATTCAAAGACCAAAAGTTATTTATAAAATGATAACTATTTAGAACAAATGATGTGATTTCCTAG
191 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTTAA
* * **
6405 GCATGGGATGTTCGAAAAA---CTCGAAGGAATGGATCGTCTTAAATACTTTAAGGAACCGAAGT
256 GCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGT
* * * * * * *
6467 TAGAATAGAACTCGTAAAAGTTTGTCAAGTTCAGAAGTT-AAGCCAAGCACCAAGGGAGAAACTA
321 TATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCAA-CCGAGAACCAAGAGAGAAACAA
* *
6531 TTCTCACCTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
385 TTCTCACATAAATAACTTTTTAATTCAAAGACCAAAAGTTGTTT
* * ** *
6575 ACAAAATGGCAACTATTTAGACCAAATGATGCGATTTCCTTACCATGGAATGTTTGAAAAATTGC
1 ACAAAATGACAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATG-TTGAAAAATTGC
* ** *
6640 TCGAAGGATTAAATCGTCTTCAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT-AAAGTTT
65 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * *
6704 GTCAGGTT-TGAAGTTCGACAGAGAAGCAAGAAAGAAACAATTCTCACATAAATAA-TTTTTGAA
130 GTCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACTATTCTCAC-TAAATAAGTTTTT-AA
* * * * ** **
6767 TTCAAAGACCGAAACTTTTTTACAAAATGACAACTATTTATACCAAATGATTTGATTTCCCAAGC
193 TTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTTAAGC
* * * * *
6832 ATGCAATATTTCG-AAAATTGCTCGAAGGAATGAAGCGTCTTGAATACTTTAAGGAAAAAAAGTT
258 ATGGAAT-GTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTT
* * * * *
6896 ATAAAAGAACTCGTTAAAGTTTGTCAGGTTCGGAAGTTCGACCGAAAACCAAGAAAGAAACAATT
322 ATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATT
* * * * *
6961 CTCATATAAATAACTTTTTAATTTAAATAACAAAAGTTTTTT
387 CTCACATAAATAACTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * *
7003 ACAAAATGACAATCTATTTAG-CACAATTAATGCGATTTCTC-GGCATGGAATGTTCGAAAAATT
1 ACAAAATGACAA-CTATTTAGAC-CAAATGATGTGATTTCCCAAGCATGGAATGTT-GAAAAATT
* * * *
7066 ACAT-GAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAAAAAAGAACTTGTAAAAG
63 GC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAG
* ** * *
7130 TTTGTCAGGTTC-GAAGTTC-AGCCGAGAAGTAAGAAAGAAACAATTCTCACATAAAGAAGTTTT
127 TTTGTCAAGTTCGGAAGTTCGA-CCGAGAACCAAGAAAGAAACTATTCTCAC-TAAATAAGTTTT
* * * *
7193 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAATATTTATACCAAATGATGAGATTTC--C
190 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTTA
** *
7256 CCCTGTGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAA
255 AGC-ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAA
* * * * *
7321 GTTATAAAAGAACTCGTTAAAGTTTGTCAGGTTCGAAAGTTCAACCGAGAACCAAGAAAGAAACT
319 GTTATAAAAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACA
* * ** *
7386 ATTCTCACATAAATAA-TTTTTAATTTAAAGAGCAAATTTTTTTT
384 ATTCTCACATAAATAACTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * *
7430 ACAAAATGACAATCTATTTAGAACAATTAATGCGATTTCTCAGGCATGGAAT
1 ACAAAATGACAA-CTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAAT
7482 ATGGTGTGAG
Statistics
Matches: 2575, Mismatches: 414, Indels: 137
0.82 0.13 0.04
Matches are distributed among these distances:
424 4 0.00
425 103 0.04
426 19 0.01
427 161 0.06
428 517 0.20
429 755 0.29
430 218 0.08
431 453 0.18
432 210 0.08
433 134 0.05
434 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (428 bp):
ACAAAATGACAACTATTTAGACCAAATGATGTGATTTCCCAAGCATGGAATGTTGAAAAATTGCT
CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
TCAAGTTCGGAAGTTCGACCGAGAACCAAGAAAGAAACTATTCTCACTAAATAAGTTTTTAATTC
AAAGACCAAAAGTTGTTTACAAAATGACAACTATTTAGACCAAATGATGCGATTTCTTAAGCATG
GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAAAAGTTATAA
AAGAACTCGTAAAAGTTTGTCAAGTTCGGAAGTTCAACCGAGAACCAAGAGAGAAACAATTCTCA
CATAAATAACTTTTTAATTCAAAGACCAAAAGTTGTTT
Done.