Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006061.1 Kokia drynarioides strain JFW-HI SEQ_120537, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1740
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32


Found at i:640 original size:17 final size:17

Alignment explanation


    Indices: 607--657  Score: 57
    Period size: 17  Copynumber: 2.9  Consensus size: 17

        597 CATTAAATTT

                        *     
        607 CAATGACAAATGGAAATG
          1 CAATGAC-AATGAAAATG

                             
        625 CAATGACAATGAAAATG
          1 CAATGACAATGAAAATG

              *  *    *     
        642 CAGTGGCAATTAAAAT
          1 CAATGACAATGAAAAT

        658 ATAATGAAAA


Statistics
Matches: 29,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  17   22  0.76
  18    7  0.24

ACGTcount: A:0.49, C:0.12, G:0.20, T:0.20


Consensus pattern (17 bp):   
CAATGACAATGAAAATG

Found at i:1152 original size:12 final size:12

Alignment explanation


    Indices: 1135--1159  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1125 GCTTCATTTC

                        
       1135 CTTCCTCTTCTT
          1 CTTCCTCTTCTT

                        
       1147 CTTCCTCTTCTT
          1 CTTCCTCTTCTT

             
       1159 C
          1 C

       1160 CATGGGTGTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56


Consensus pattern (12 bp):   
CTTCCTCTTCTT
Done.