Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006063.1 Kokia drynarioides strain JFW-HI SEQ_120540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13554
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Found at i:5847 original size:216 final size:217
Alignment explanation
Indices: 5471--7949 Score: 2744
Period size: 216 Copynumber: 11.5 Consensus size: 217
5461 GGAAAATATG
* * * * * *
5471 GAAGTTATAAAAGAACTCGCAAATGTTT-ACCAAGTTCAGATGTTCGGCCAAGAAACAAGAGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGGCTAAGAACCAAGAGAGA
** * *
5535 AACAATTCTCGTGTAAATAAGTTTTAAATTCAAAGACTAAAAGTTG-TTACAAAATGACAAACTA
65 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* *
5599 TTTAGACCAAATGATGCGATTTCTCGAGCATGGATTGTTCAGAAAATAGCTCGAAGGAATGGATC
130 TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
* *
5664 GTCTTGAATACTTTAAGGACA-T
195 ATCTTGAATACTTTAAGGAAACT
** **
5686 GAAGTTATAAAAGAACTCGTAAAAGTTTGACTTGTTCGGAAGTTCTTCTAAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCTAAGAACCAAGAGAGAA
* * * * * *
5751 ACACTTCTCACGCAGATATGTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAAAGACAAACTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* *
5816 TTAGACCAAATGATGCGATTTCTCAAGCATGGAATGTTC-GAAAAATTGCTCGAAGGATTGGATC
131 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATC
*
5880 ATCTTGAATACTTTAAGG-AACC
195 ATCTTGAATACTTTAAGGAAACT
* * * * * * ** * *
5902 GAAGTTATAAAAGAACTCGCAAACGTTTAATAAGTTCGGATGTTCAGCTAAGAAATAAAATAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCTAAGAACCAAGAGAGAA
** *
5967 ACAATTGACACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * ** * * *
6032 TTAGACCAAATGATGTGATTTCCCAAGCATGGAAT-TTTTGAAAAACTGCTAGATGGAATGGATC
131 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAG-AAAATTGCTCGAAGGAATGGATC
* *
6096 ACCTTGAATACTTTAA-GAAATT
195 ATCTTGAATACTTTAAGGAAACT
* * *
6118 GAAGTTA-ATAAACAACTCGTAAAAGTTTGACAAGTTCGAAAGATCGG-TCAAGAACCAAGAGAG
1 GAAGTTATA-AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCT-AAGAACCAAGAGAG
* * * * *
6181 AAACAATTCTCACGTAAATAATTTTTTAATTCGAAGACCAAAAGTTGGTCAGAAAATGACAAACT
64 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * *
6246 ATTTAAACCAAATGATACAATTTTTCGAGCATGGAATGTTC-GAAAATATGCTCGAAGGAATGGA
129 ATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAAT-TGCTCGAAGGAATGGA
6310 T-AGTCTTGAATACTTTAA-GAAACT
193 TCA-TCTTGAATACTTTAAGGAAACT
* * * * *
6334 GAAGTTA-ATAAAGAACTTGTAAAAGTTTGACAAGTTTGAAAGATCGGCCAAGAACCAAGAGAGA
1 GAAGTTATA-AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCTAAGAACCAAGAGAGA
** * * *
6398 AACAATTCTCACAAAAATAAGTTTTTAAATCAAAAACCAAAAGTTGTTCACAAAATGACAAACTA
65 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* ** ** *
6463 TTTAGATCAAATGATGCGATTTCTCGAGCATGGAATGTTTGGAAAATTTTTCGAAGGAATGTATC
130 TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
* * *
6528 ACCTTGAATAATTTAA-GAAATT
195 ATCTTGAATACTTTAAGGAAACT
* * *
6550 GAAGTTA-ATAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGATCGGCCAAGCACCAAGAGAGA
1 GAAGTTATA-AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCTAAGAACCAAGAGAGA
* *
6614 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAAACCAAAAGTAGTTTACAAAATGACAAACTA
65 AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA
* ** *
6679 TTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGGAAAACTGCTCGAAGGAATGGATC
130 TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
** * *
6744 GCCTTGAAAACTTT-ATGAAACT
195 ATCTTGAATACTTTAAGGAAACT
* * *
6766 GAAG-TAAATAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGATT-GGCGAAGAACCAAGAGAG
1 GAAGTTATA-AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG-TTCGGCTAAGAACCAAGAGAG
* * * ** * *
6829 AAATAATTCTCACGTAAATACA-TTTTTAATTCAAAGATCGAATCTTATTTACAATATGACAAAC
64 AAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
* ** * **
6893 TATTAAGACCAAATGATGAAATTTTTCGAGCATGGAATGTTCA-AAAATTGCTCGAAGGAACAGA
128 TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGA
* * *
6957 TCATGTTGAATAGTTTAAGG-AACG
193 TCATCTTGAATACTTTAAGGAAACT
* * * ** *
6981 GAAGTTATAAAAGAACTGGTAAAAGTTTGATAAGTTTGGAAACTCGGCTAAGAACGAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCTAAGAACCAAGAGAGAA
* * * * * * *
7046 GCAATTCTTATGTAAATATGTTTTTAATTCAAATACCAAAACTTGTTTACAAAATGAAAAACTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * *
7111 TTA-AGCCAAATGATGTGATTTCCCGAGCATGAAATGTTCAGAAAACTGCTCGAA-GAATGGATC
131 TTAGA-CCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATC
*
7174 GTCTTGAATACTTTAAGG-AACT
195 ATCTTGAATACTTTAAGGAAACT
* ** **
7196 GAAGTTATGAAAGAACTCGTAAAAGTTTGACTTGTTCGGAAGTTCTTCTAAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCTAAGAACCAAGAGAGAA
*
7261 ACAATTCTCACGTAAATAAGTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
66 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* * * * * *
7326 TTAGACCAAATTATGTGATTTCCCGAGCATGAAATGTTCAGAAAATTGATCGAATGAATGGATCA
131 TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCA
* *
7391 TCATGAATACTTTAAGG-AACC
196 TCTTGAATACTTTAAGGAAACT
* * * * * * * *
7412 AAAGTTATAAAAGAACTCATAAAAATATT-ACAATTTTGAAAGTTCGTCTAAGAACCATGAGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGT-TTGACAAGTTCGGAAGTTCGGCTAAGAACCAAGAGAGA
* * * * * *
7476 AA-ATTTTCTCACGTAAATAAGTTTTTAATTCAAACACCAAAAGTTCTTTTAAAAAATAACAAGC
65 AACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAAC
* * * * * ** * *
7540 TATTTAGGCTAAATGATGTGATTTCTCAAGCATAGAATGTTTGGAAAATTGCTCAAAGGAATGTA
128 TATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGA
** *
7605 TC-TCCTTGAATACAGTAAGG-AATT
193 TCAT-CTTGAATACTTTAAGGAAACT
* * * * * *
7629 GAAGTTATAAAATACCTCGTCAAAGTTTGACAAGTTCGAAAG-T-GTGTTCAAGAACCAAGAGGG
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCG-GCT-AAGAACCAAGAGAG
* * * * *
7692 AAACAATTCTCACATAAACAAGTTTTTAATTCAATGACCAAAAGTTGTCTACAAAATGATAAACT
64 AAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACT
* * * *
7757 ATTTAGACCAAATGATACGATTTC-CTGAGCGTGGAATGTTCAAAAAATTGCTCGAAGGAATGGG
129 ATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGA
* *
7821 CCACCTTGAATACTTTAA-GAAACT
193 TCATCTTGAATACTTTAAGGAAACT
** * * *
7845 -AAGGTTA-ATAAAGAACTTATAAAAGTTTGACAAGTTTGGAAGTTCGTCCTAA-AACCAATAGA
1 GAA-GTTATA-AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCG-GCTAAGAACCAAGAGA
* *
7907 GAAACAATTCTTACGTAAATACGTTTTTAATTCAAAGACCAAA
63 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
7950 TCTTGTTTTG
Statistics
Matches: 1905, Mismatches: 318, Indels: 81
0.83 0.14 0.04
Matches are distributed among these distances:
214 2 0.00
215 462 0.24
216 1256 0.66
217 181 0.10
218 4 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (217 bp):
GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGGCTAAGAACCAAGAGAGAA
ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
TTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAGAAAATTGCTCGAAGGAATGGATCA
TCTTGAATACTTTAAGGAAACT
Found at i:9824 original size:32 final size:31
Alignment explanation
Indices: 9783--9880 Score: 160
Period size: 32 Copynumber: 3.1 Consensus size: 31
9773 AAGTTTGACA
9783 AATTTGACAAGTTCAGAAGTTCATCCTAGAAC
1 AATTTGACAAGTTC-GAAGTTCATCCTAGAAC
9815 AATTTGACAAGTTCGAAAGTTCATCCTAGAAC
1 AATTTGACAAGTTCG-AAGTTCATCCTAGAAC
*
9847 AATTTGACAAGTTCGGAAGTTCATCCCAGAAC
1 AATTTGACAAGTTC-GAAGTTCATCCTAGAAC
9879 AA
1 AA
9881 AGGGAGAACA
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
31 1 0.02
32 61 0.97
33 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (31 bp):
AATTTGACAAGTTCGAAGTTCATCCTAGAAC
Found at i:10263 original size:216 final size:215
Alignment explanation
Indices: 9889--10455 Score: 701
Period size: 216 Copynumber: 2.6 Consensus size: 215
9879 AAAGGGAGAA
* *
9889 CAAAGACCAAAAGTTGTTTGCAAAATGACAAACTATTTAAACCAAATGATGCGATTTCTCGAGCA
1 CAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGATGCGATTTCCCGAGCA
* * * ** *
9954 TGGAATGTTCGAAAAATTGCTCAAATGATTGGATCATGTTTAATACTTTAAGGAACCGAAGTTAT
66 TGGAATGTTAGAAAAATTGCTC-GATGAATGGATCACCTTGAATACTTTAAGGAACCGAAGTTAT
* * *** *
10019 AAAAGAACTCACAAATGTTTGACAAGTTCGACTGTTCGACCAAGAAAC-TAGAGAG-AAACAATT
130 AAAAGAACCCACAAATGTTTGACAAGTTCAAAAATTCGACCAAG-AACGAAGAGAGAAAAC-ATT
** *
10082 CTCATGTAAATAAGTTTTTAATT
193 CTCACATAAATAAGTTTTGAATT
* * *
10105 CAAAGACCAAAAGTTGTTCATAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
1 CAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGATGCGATTTCCCGAGCA
* *
10170 TGGAATGTTAGAAAAATTGCTCGATGGAATGGATCGCCTTGAATACTTTAAGGAACCAAAGTTAT
66 TGGAATGTTAGAAAAATTGCTCGAT-GAATGGATCACCTTGAATACTTTAAGGAACCGAAGTTAT
* * *
10235 AAAAGAACCCATAAGTGTTTGACAAGTTCAAAAATTCGTCCAAGAACGAAGAGAGAAAACATTCT
130 AAAAGAACCCACAAATGTTTGACAAGTTCAAAAATTCGACCAAGAACGAAGAGAGAAAACATTCT
*
10300 CACATGAATAAGTTTTGAATT
195 CACATAAATAAGTTTTGAATT
* * * * * *
10321 CAAAGACCAAAAGTTGTTTACAAAATAACAAACTA-TTATACCAAATGATACTATTTCGCGAGTA
1 CAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGATGCGATTTCCCGAGCA
* * * * * * *
10385 TGGAATGTTTTG-GAAATTACTCGAAAGAACGGATCACCTTGAATACTTTAAGGAATCGAAGTCA
66 TGGAATG-TTAGAAAAATTGCTCG-ATGAATGGATCACCTTGAATACTTTAAGGAACCGAAGTTA
10449 TAAAAGA
129 TAAAAGA
10456 TGTAGCACTC
Statistics
Matches: 303, Mismatches: 43, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
215 85 0.28
216 214 0.71
217 4 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (215 bp):
CAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGATGCGATTTCCCGAGCA
TGGAATGTTAGAAAAATTGCTCGATGAATGGATCACCTTGAATACTTTAAGGAACCGAAGTTATA
AAAGAACCCACAAATGTTTGACAAGTTCAAAAATTCGACCAAGAACGAAGAGAGAAAACATTCTC
ACATAAATAAGTTTTGAATT
Found at i:11530 original size:22 final size:22
Alignment explanation
Indices: 11469--11557 Score: 85
Period size: 22 Copynumber: 4.2 Consensus size: 22
11459 CCTATTGACC
* * *
11469 TGACCCATTAACTTTGACCTGT
1 TGACCTATTGACTTTGACCCGT
* * * *
11491 TGACATGTTGTCTCTGACCCGT
1 TGACCTATTGACTTTGACCCGT
11513 TGACCTATTGACTTTGACCCGT
1 TGACCTATTGACTTTGACCCGT
*
11535 TGA-CT-TTGACTTT-AACCGT
1 TGACCTATTGACTTTGACCCGT
11554 TGAC
1 TGAC
11558 TTTTCTTTGA
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
19 8 0.15
20 8 0.15
21 2 0.04
22 36 0.67
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (22 bp):
TGACCTATTGACTTTGACCCGT
Found at i:11555 original size:19 final size:20
Alignment explanation
Indices: 11509--11560 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 20
11499 TGTCTCTGAC
*
11509 CCGTTGACCTATTGACTTTGAC
1 CCGTTGA-CT-TTGACTTTGAA
11531 CCGTTGACTTTGACTTT-AA
1 CCGTTGACTTTGACTTTGAA
11550 CCGTTGACTTT
1 CCGTTGACTTT
11561 TCTTTGACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 12 0.41
20 8 0.28
21 2 0.07
22 7 0.24
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.40
Consensus pattern (20 bp):
CCGTTGACTTTGACTTTGAA
Found at i:12571 original size:216 final size:216
Alignment explanation
Indices: 12190--13551 Score: 1480
Period size: 216 Copynumber: 6.3 Consensus size: 216
12180 CCTGGGATCA
**
12190 TAAATAAGTTTTTAATTCAAAGACTTAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * * *
12255 ATGCGATTTCCCAAGCATGGAATGTT-AAGAAAACTACTCGATGGATTGGATCGCCTTGAAAAAT
66 ATGCAATTTCCCAAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGCCTTGAAAACT
* * * * *
12319 TTATGAAACTGAAGTAA-ATAAAGAAATCGA-AAAAGTTTGACAAGTTCGGAAGATT-GGCCAAG
130 TTAAGGAACCGAAGTAATA-AAAGAACTC-ATAAAAGTTTGACAAGTTCGGAAG-TTCGCCCAAG
12381 AACCAAGAGAGAAATAATTCTCACG
192 AACCAAGAGAGAAATAATTCTCACG
* * *
12406 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGAAAAATTATTTAGACCAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * *
12471 ATGCAATTTCCCTAGCATGGAATGTTCGAAAAACTGCTTGAAGGAATGGATCGCCTTGAAAACTT
66 ATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGCCTTGAAAACTT
* * ** * * * *
12536 TATGAAACTAAAGTAA-ATAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGATCGGCCAAAAAC
131 TAAGGAACCGAAGTAATA-AAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCGCCCAAGAAC
**
12600 CAAGAGTTAAATAATTCTCACG
195 CAAGAGAGAAATAATTCTCACG
* ** * * *
12622 TAAATATA-TTTTTAATGCAAAGACCAAATCTTGATTACAAAATCACAAACTATTTAGACCTAAT
1 TAAATA-AGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
**** * * * *
12686 GATGCAATTTTTTGAGCATGGAATGTTCGAGAAATTGCTCGAAGGAATGGAT-G-CGTGAATAGT
65 GATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGCCTTGAAAACT
* * *
12749 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCCAA-AA
130 TTAAGGAACCGAAGTAATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTC-GCCCAAGAA
* * * *
12813 TCAAGAGAGAAACAATTCCCATG
194 CCAAGAGAGAAATAATTCTCACG
* * * * * *
12836 TAAATAAGCTTTTAATTTAGAGACGAAAAGATGTTTACAAAATGACAAACTATTTAGACCAAATA
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * * * * * * * * *
12901 ACGCGATCTCTCGAGCATGAAATGTTGGGAAAATTGCTTGAAGAAATGGTTCGTCTT-AAATACT
66 ATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGCCTTGAAA-ACT
* * * ** *
12965 TTAAGGAACCAAAGTAATAAAAGAAC-CAATAAAAGTTTGACAAGTTTGGAGGTTCATCCAAGAC
130 TTAAGGAACCGAAGTAATAAAAGAACTC-ATAAAAGTTTGACAAGTTCGGAAGTTCGCCCAAGAA
13029 CCAAGAGAGAAATAATTCTCACG
194 CCAAGAGAGAAATAATTCTCACG
* **
13052 TCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGATTAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * *
13117 AT-AAGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAACGGATCGCCTTGAATAA-
66 ATGCA-ATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGCCTTGAA-AAC
* * * * *
13180 TTTAAGGAACTGAAGTTATAAAAGAAC-CAATAAGAGTTTGACAAGTTCGGAAGTTCGTCAAAGA
129 TTTAAGGAACCGAAGTAATAAAAGAACTC-ATAAAAGTTTGACAAGTTCGGAAGTTCGCCCAAGA
*
13244 ACCAAGAGAGAAACAATTCTCACG
193 ACCAAGAGAGAAATAATTCTCACG
* * * *
13268 TGAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTACAAAATGACAAACCATTTAGACCAAATA
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
*** * * * * * * *
13333 ATATGATTTCCCAAGCATGCAATGTTCGGAGAATTGATCGAAGGAACGAATCGCCTTGAATACTT
66 ATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGCCTTGAAAACTT
** * *
13398 TAAGGAACCGAAGCT-ATAAAAGAACAAATAAGAGTTTGACAAGTTTGGAAGTTCGCCCCAA-AA
131 TAAGGAACCGAAG-TAATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCG-CCCAAGAA
* *
13461 CCAAGAGAGAAAAAATTCTCA-T
194 CCAAGAGAGAAATAATTCTCACG
* *
13483 TAAATAAGTTTTAAATTCAAAGAACAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
13548 ATGC
66 ATGC
13552 GAT
Statistics
Matches: 970, Mismatches: 156, Indels: 41
0.83 0.13 0.04
Matches are distributed among these distances:
213 1 0.00
214 163 0.17
215 77 0.08
216 719 0.74
217 9 0.01
218 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.26
Consensus pattern (216 bp):
TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
ATGCAATTTCCCAAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGCCTTGAAAACTT
TAAGGAACCGAAGTAATAAAAGAACTCATAAAAGTTTGACAAGTTCGGAAGTTCGCCCAAGAACC
AAGAGAGAAATAATTCTCACG
Done.