Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01006069.1 Kokia drynarioides strain JFW-HI SEQ_120550, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9407
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Warning! 2 characters in sequence are not A, C, G, or T
Found at i:3678 original size:11 final size:11
Alignment explanation
Indices: 3662--3695 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
3652 GATAAATGAT
3662 ATGTGATGTGA
1 ATGTGATGTGA
3673 ATGTGATGTGA
1 ATGTGATGTGA
3684 AT-TGATGATGA
1 ATGTGATG-TGA
3695 A
1 A
3696 ATATGGTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 5 0.23
11 17 0.77
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (11 bp):
ATGTGATGTGA
Found at i:4022 original size:19 final size:19
Alignment explanation
Indices: 3998--4056 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
3988 TCATCCAATG
* *
3998 ATGCACTATATGTTCTAGT
1 ATGCACTATATGTGCCAGT
4017 ATGCACTATATGTGCCAGT
1 ATGCACTATATGTGCCAGT
* * *
4036 GTGCACTATGTTTGCCAGT
1 ATGCACTATATGTGCCAGT
4055 AT
1 AT
4057 ATTTGCTTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (19 bp):
ATGCACTATATGTGCCAGT
Found at i:5950 original size:50 final size:50
Alignment explanation
Indices: 5875--6375 Score: 493
Period size: 50 Copynumber: 10.0 Consensus size: 50
5865 AGAAAAACAT
*
5875 GAAGATTTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
* * *
5925 GAAGATGTGAAGGGAAAGGCTGAGGCCGCAACGGTGAACCCAATACCAT-
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
* * * *
5974 GAAGATTTGAAGGGAAAGGTTGAGGCCGTAACGGTAAACTCGATACCTTA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
* * * * *
6024 -AAGATGTTGAAAGGAAAGGTTGAGGCCGCAACGGCGAACCTGGTACCGTA
1 GAAGATG-TGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
* * *
6074 GAAGATGTGATGGGAAAGGTTGAGGCCGCAACGATGAACCCAATACCTTA
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
* * * * * * * * ***
6124 AAAGATGTTAAAGGGAAAGGTTAAGGTCACCACAGTGAACCCGGTAAAGTA
1 GAAGATG-TGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
* * * * * * *
6175 AAAGATGTTGAAGGGAAATGTTGAGGCTGTAACGGCGAACCTGGTACCTTA
1 GAAGATG-TGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
* ** *
6226 AAAGATGTTGAAGGGAAAGGTTGAGGCCATAATGGTGAACCCGATACCTTA
1 GAAGATG-TGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
* * * ** * *
6277 AAAGATGTGACGGGAAAGGTTGAGGCCGTAACGACGAACCTGATACCTTG
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
* * * * * *
6327 GAAGATATGAAGGGAAAGGTTGAGGTCACAAAGGCGAACCCGGTACCTT
1 GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTT
6376 CGAAAACAAG
Statistics
Matches: 367, Mismatches: 80, Indels: 8
0.81 0.18 0.02
Matches are distributed among these distances:
49 47 0.13
50 196 0.53
51 124 0.34
ACGTcount: A:0.34, C:0.16, G:0.31, T:0.18
Consensus pattern (50 bp):
GAAGATGTGAAGGGAAAGGTTGAGGCCGCAACGGTGAACCCGATACCTTA
Found at i:6570 original size:41 final size:41
Alignment explanation
Indices: 6523--6610 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
6513 TAGAGTGAAG
*
6523 TTACCCTTAATCAAGAAGGGCAGATTGAAGATTTCAATCTT
1 TTACCCTTAATCAAGAAGGGCAGAATGAAGATTTCAATCTT
*
6564 TTACCCTTAATCAAGAAGGGCAGAATGAAGATTTCGATCTT
1 TTACCCTTAATCAAGAAGGGCAGAATGAAGATTTCAATCTT
6605 TTACCC
1 TTACCC
6611 CAAGCCTGGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (41 bp):
TTACCCTTAATCAAGAAGGGCAGAATGAAGATTTCAATCTT
Found at i:6724 original size:78 final size:76
Alignment explanation
Indices: 6635--7044 Score: 444
Period size: 78 Copynumber: 5.3 Consensus size: 76
6625 TCATAGTCAA
** * *
6635 CCAATCTCTTACCTTGAGCCTGGGGTAGATTACAGCCATCCGATCTTTTACGCCGAGCTTGGGGT
1 CCAATCTCTTACCCCGAGCCTGGGGTAGATTATAGCCATCCGATCTTTTAC-CCGAGCTTGGGGC
*
6700 AGATCACCATCAG
65 AAATCA-CATCAG
* *
6713 CCAATCTCTTACCTCGAGCCTGGGGTAGATTGTAGCCATCCGATCTTTTACCTCGAGCTTGGGGC
1 CCAATCTCTTACCCCGAGCCTGGGGTAGATTATAGCCATCCGATCTTTTACC-CGAGCTTGGGGC
*
6778 AGATCACAGTCAG
65 AAATCACA-TCAG
* * * * * * * **
6791 CCAATCTTTTACCCCAAGCCTGGGG-AGATTACAGTCGTCCGATCTTTTACCCCGAACCTGATGC
1 CCAATCTCTTACCCCGAGCCTGGGGTAGATTATAGCCATCCGATCTTTTA-CCCGAGCTTGGGGC
6855 AAATCACAGTCAG
65 AAATCACA-TCAG
* * * * * **
6868 CCAATCTCTTACCCCAAGCTTGGGGCAAATTATAGCCATCCGATCTTTTACCCCGAGCCTAAGGC
1 CCAATCTCTTACCCCGAGCCTGGGGTAGATTATAGCCATCCGATCTTTTA-CCCGAGCTTGGGGC
* *
6933 ATATCACATCAA
65 AAATCACATCAG
* * * *
6945 CCAATCTCTTACCCCGAGCTTGGGGTAGATTGTAGCCATTCAATCTTTTACCTCGAGCTTGGGGC
1 CCAATCTCTTACCCCGAGCCTGGGGTAGATTATAGCCATCCGATCTTTTACC-CGAGCTTGGGGC
*
7010 AAATCACCATCAA
65 AAATCA-CATCAG
*
7023 CCAATCTTTTACCCCGAGCCTG
1 CCAATCTCTTACCCCGAGCCTG
7045 AGGCAGATCA
Statistics
Matches: 287, Mismatches: 39, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
76 2 0.01
77 127 0.44
78 158 0.55
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (76 bp):
CCAATCTCTTACCCCGAGCCTGGGGTAGATTATAGCCATCCGATCTTTTACCCGAGCTTGGGGCA
AATCACATCAG
Found at i:6731 original size:39 final size:38
Alignment explanation
Indices: 6600--7748 Score: 385
Period size: 39 Copynumber: 29.7 Consensus size: 38
6590 GAAGATTTCG
* * * * * *
6600 ATCTTTTACCCCAAGCCT-GGGCAGCTCATAGTCAACCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
** * * * * * *
6638 ATCTCTTACCTTGAGCCTGGGGTAGATTACAGCCATCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * *
6677 ATCTTTTACGCCGAGCTTGGGGTAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCA-CATCAGCCA
* * * *** * * *
6716 ATCTCTTACCTCGAGCCTGGGGTAGATTGTAGCCATCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* *
6755 ATCTTTTACCTCGAGCTTGGGGCAGATCACAGTCAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * * * *
6794 ATCTTTTACCCCAAGCCTGGGG-AGATTACAGTC-GTCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAG-CCA
* * * ** *
6832 ATCTTTTACCCCGAACCTGATGCAAATCACAGTCAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * * * * * *
6871 ATCTCTTACCCCAAGCTTGGGGCAAATTATAGCCATCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * ** * *
6910 ATCTTTTACCCCGAGCCTAAGGCATATCACATCAACCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACATCAGCCA
* *** * **
6948 ATCTCTTACCCCGAGCTTGGGGTAGATTGTAGCCATTCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * * *
6987 ATCTTTTACCTCGAGCTTGGGGCAAATCACCATCAACCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCA-CATCAGCCA
* * * *
7026 ATCTTTTACCCCGAGCCTGAGGCAGATCACCATTAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCA-CATCAGCCA
* * * * * * *
7065 ATCTCTTACCCCGAGCCTAGGGCAGATTATAGCCATCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* ** *
7104 ATCTTTTACCCTAAGCTTGGGGCAGATCATAGTCAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* ** * * * **
7143 GTCTCTTACCTTGAGCTTAGGGCAGATTGCA-ACCATCTG
1 ATCTCTTACCCCGAGCTTGGGGCAGA-T-CACATCAGCCA
*
7182 ATCTCTTACCCCGAGCTTGAGGCAGAT--CAT---CCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACATCAGCCA
* * * * * * *
7215 ATCTCTTATCCCGAGCTTGGGGCAAATTATAGCCATCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * * * *
7254 ATCTCTTACCCCAAGCTTGTGGTAGATCACAATTAGTCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCAC-ATCAGCCA
* * * *** * * *
7293 ATCTCTTACCTCAAGCTTAGGGCAGATTGTAGCCATCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * * *
7332 ATCTTTTATCCCAAGCTTGGGGCAGATCACTATCAGCTA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCAC-ATCAGCCA
* * * * *
7371 ATCTCTTACCCCGAGCCTGGGGCAGATTATAGCCATCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * * *
7410 ATCTCTTACCCCGAGCCTAGGGCAAATTACCATCAGCCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCA-CATCAGCCA
* * * * ** * ** *
7449 ATCTCTTACCCCGAGCTCGAGGTAAATTTCAACTATTCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACATC-AGCCA
* * * ** * *
7488 ATCTCTTACCCTGAGCCTAGGATAGATCACCATCTGTCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCA-CATCAGCCA
* * * * *** ** *
7527 ATCTCTTTCCTCGAGCCTGGGGCAAATTGTAGTCATTCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACA-TCAGCCA
* * * ****
7566 ATCTTTTACCTCGAGCTTGGGGCAGATTGTA-AT-ATTTTG
1 ATCTCTTACCCCGAGCTTGGGGCAGA-T-CACATCA-GCCA
* * * ***
7605 ATCTTTTACCCCGAGCCTGGGGCAGATCACCATTAATTA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCA-CATCAGCCA
* * * * *
7644 ATCTCTTACACCGAGCTTGGGGCAGATTACAACCATCCG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCAC-ATCAGCCA
* * * *
7683 ATCTCTTACCCCAAGCCTGGGGCAGATTACCATCAACCA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCA-CATCAGCCA
** *
7722 ATCTCTTACCTTGAGCTCGGGGCAGAT
1 ATCTCTTACCCCGAGCTTGGGGCAGAT
7749 TACAGCCATT
Statistics
Matches: 818, Mismatches: 259, Indels: 67
0.72 0.23 0.06
Matches are distributed among these distances:
33 25 0.03
35 1 0.00
36 1 0.00
37 2 0.00
38 82 0.10
39 688 0.84
40 16 0.02
41 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (38 bp):
ATCTCTTACCCCGAGCTTGGGGCAGATCACATCAGCCA
Found at i:6801 original size:117 final size:117
Alignment explanation
Indices: 6600--7748 Score: 626
Period size: 117 Copynumber: 9.9 Consensus size: 117
6590 GAAGATTTCG
* * * ** * * * * * *
6600 ATCTTTTACCCCAAGCCT-GGGCAGCTCATAGTCAACCAATCTCTTACCTTGAGCCTGGGGTAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCAATCTTTTACCTCGAGCTTGGGGCAGA
* * * * * * *
6664 TTACAGCCATCCGATCTTTTACGCCGAGCTTGGGGTAGATCACCATCAGCCA
66 TCACAGTCATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * *
6716 ATCTCTTACCTCGAGCCTGGGGTAGATTGTAGCCATCCGATCTTTTACCTCGAGCTTGGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCAATCTTTTACCTCGAGCTTGGGGCAGA
* * * * *
6781 TCACAGTCAGCCAATCTTTTACCCCAAGCCTGGGG-AGATTA-CAGTC-GTCCG
66 TCACAGTCATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCA-TCAG-CCA
* * ** * *** * * * * * *
6832 ATCTTTTACCCCGAACCTGATGCAAATCACAGTCAGCCAATCTCTTACCCCAAGCTTGGGGCAAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCAATCTTTTACCTCGAGCTTGGGGCAGA
* * * * * ** * *
6897 TTATAGCCATCCGATCTTTTACCCCGAGCCTAAGGCATATCA-CATCAACCA
66 TCACAGTCATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * * *
6948 ATCTCTTACCCCGAGCTTGGGGTAGATTGTAGCCATTCAATCTTTTACCTCGAGCTTGGGGCAAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCAATCTTTTACCTCGAGCTTGGGGCAGA
* * * *
7013 TCACCA-TCAACCAATCTTTTACCCCGAGCCTGAGGCAGATCACCATTAGCCA
66 TCA-CAGTCATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * * *
7065 ATCTCTTACCCCGAGCCTAGGGCAGATTATAGCCATCCGATCTTTTACC-CTAAGCTTGGGGCAG
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCAATCTTTTACCTC-GAGCTTGGGGCAG
* * * ** * * *
7129 ATCATAGTCAGCCAGTCTCTTACCTTGAGCTTAGGGCAGATTGCAACCATCTG---
65 ATCACAGTCATCCAATCTCTTACCCCGAGCCTGGGGCAGA-T-C-ACCATCAGCCA
* * * *
7182 ATCTCTTACCCCGAGCTTGAGGCAGA---T---CATCCAATCTCTTATCC-CGAGCTTGGGGCAA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCAATCTTTTA-CCTCGAGCTTGGGGCAG
* * * * * * * * * * *
7240 ATTATAGCCATCCGATCTCTTACCCCAAGCTTGTGGTAGATCACAATTAGTCA
65 ATCACAGTCATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * * * * *
7293 ATCTCTTACCTCAAGCTTAGGGCAGATTGTAGCCATCCGATCTTTTATCC-CAAGCTTGGGGCAG
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCAATCTTTTA-CCTCGAGCTTGGGGCAG
* * * * * *
7357 ATCACTA-TCAGCTAATCTCTTACCCCGAGCCTGGGGCAGATTA-TAGCCATCCA
65 ATCAC-AGTCATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCA-TCAGCCA
* * * * * * *
7410 ATCTCTTACCCCGAGCCTAGGGCA-AAT-TA-CCATCAGCCAATCTCTTACCCCGAGCTCGAGGT
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCAT---CCAATCTTTTACCTCGAGCTTGGGGC
* * * * * * ** * *
7472 AAATTTCA-ACT-ATTCGATCTCTTACCCTGAGCCTAGGATAGATCACCATCTGTCA
63 AGA--TCACAGTCATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * * * * *
7527 ATCTCTTTCCTCGAGCCTGGGGCAAATTGTAGTCATTCGATCTTTTACCTCGAGCTTGGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCAATCTTTTACCTCGAGCTTGGGGCAGA
*** * *** * * ***
7592 TTGTAAT-ATTTTGATCTTTTACCCCGAGCCTGGGGCAGATCACCATTAATTA
66 TCACAGTCA-TCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
* * ** * * * * * *
7644 ATCTCTTACACCGAGCTTGGGGCAGATTACAACCATCCGATCTCTTACCCCAAGCCTGGGGCAGA
1 ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCAATCTTTTACCTCGAGCTTGGGGCAGA
* * **
7709 TTACCA-TCAACCAATCTCTTACCTTGAG-CTCGGGGCAGAT
66 TCA-CAGTCATCCAATCTCTTACCCCGAGCCT-GGGGCAGAT
7749 TACAGCCATT
Statistics
Matches: 778, Mismatches: 215, Indels: 79
0.73 0.20 0.07
Matches are distributed among these distances:
108 5 0.01
109 1 0.00
110 1 0.00
111 74 0.10
112 3 0.00
114 6 0.01
115 6 0.01
116 197 0.25
117 462 0.59
118 8 0.01
119 6 0.01
120 9 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (117 bp):
ATCTCTTACCCCGAGCCTGGGGCAGATTGTAGCCATCCAATCTTTTACCTCGAGCTTGGGGCAGA
TCACAGTCATCCAATCTCTTACCCCGAGCCTGGGGCAGATCACCATCAGCCA
Found at i:7074 original size:155 final size:155
Alignment explanation
Indices: 6598--7091 Score: 534
Period size: 155 Copynumber: 3.2 Consensus size: 155
6588 ATGAAGATTT
* * * **
6598 CGATCTTTTACCCCAAGCCT-GGGCAGCTCATAGTCAACCAATCTCTTACCTTGAGCCTGGGGTA
1 CGATCTTTTACCCCGAGCCTAGGGCAGATCACAGTCAACCAATCTCTTACCCCGAGCCTGGGGTA
* * *
6662 GATTACAGCCATCCGATCTTTTACGCCGAGCTTGGGGTAGATCACCATCAGCCAATCTCTTACCT
66 GATTACAGCCATCCGATCTTTTAC-CCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCC
* *
6727 CGAGCCTGGGGTAGATTGTAGCCATC
130 CGAGCCTGGGGCAGATTATAGCCATC
* * * * * *
6753 CGATCTTTTACCTCGAGCTTGGGGCAGATCACAGTCAGCCAATCTTTTACCCCAAGCCTGGGG-A
1 CGATCTTTTACCCCGAGCCTAGGGCAGATCACAGTCAACCAATCTCTTACCCCGAGCCTGGGGTA
* * * * **
6817 GATTACAGTCGTCCGATCTTTTACCCCGAACCTGATGCAAATCA-CAGTCAGCCAATCTCTTACC
66 GATTACAGCCATCCGATCTTTTA-CCCGAGCTTGGGGCAAATCACCA-TCAGCCAATCTCTTACC
* * *
6881 CCAAGCTTGGGGCAAATTATAGCCATC
129 CCGAGCCTGGGGCAGATTATAGCCATC
* * *
6908 CGATCTTTTACCCCGAGCCTAAGGCATATCACA-TCAACCAATCTCTTACCCCGAGCTTGGGGTA
1 CGATCTTTTACCCCGAGCCTAGGGCAGATCACAGTCAACCAATCTCTTACCCCGAGCCTGGGGTA
** * * * *
6972 GATTGTAGCCATTCAATCTTTTACCTCGAGCTTGGGGCAAATCACCATCAACCAATCTTTTACCC
66 GATTACAGCCATCCGATCTTTTACC-CGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCC
* *
7037 CGAGCCTGAGGCAGA-T-CA-CCATTAGC
130 CGAGCCTGGGGCAGATTATAGCCA-T--C
* *
7063 CAATCTCTTACCCCGAGCCTAGGGCAGAT
1 CGATCTTTTACCCCGAGCCTAGGGCAGAT
7092 TATAGCCATC
Statistics
Matches: 276, Mismatches: 54, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
152 3 0.01
153 2 0.01
154 30 0.11
155 203 0.74
156 38 0.14
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (155 bp):
CGATCTTTTACCCCGAGCCTAGGGCAGATCACAGTCAACCAATCTCTTACCCCGAGCCTGGGGTA
GATTACAGCCATCCGATCTTTTACCCGAGCTTGGGGCAAATCACCATCAGCCAATCTCTTACCCC
GAGCCTGGGGCAGATTATAGCCATC
Done.