Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006071.1 Kokia drynarioides strain JFW-HI SEQ_120552, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1061
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.38


Found at i:344 original size:12 final size:13

Alignment explanation


    Indices: 327--368  Score: 52
    Period size: 13  Copynumber: 3.3  Consensus size: 13

        317 GGCAACCCAA

                         
        327 TTATTTTTAT-TT
          1 TTATTTTTATATT

                    *    
        339 TTATTTTTCTATT
          1 TTATTTTTATATT

                          
        352 TTATTTATT-TATT
          1 TTATTT-TTATATT

                
        365 TTAT
          1 TTAT

        369 GTCCAGGAAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  12    9  0.33
  13   16  0.59
  14    2  0.07

ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79


Consensus pattern (13 bp):   
TTATTTTTATATT

Done.