Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006072.1 Kokia drynarioides strain JFW-HI SEQ_120553, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35


Found at i:960 original size:42 final size:42

Alignment explanation


    Indices: 901--1034  Score: 130
    Period size: 42  Copynumber: 3.2  Consensus size: 42

        891 CCAATATGAT

                   *                    *              
        901 ATGATGCCCT-AAGGTGCCAAATATATTGCTTCGGACTTTTCG
          1 ATGATGCACTGAA-GTGCCAAATATATTACTTCGGACTTTTCG

                               *       *   *  *       
        943 ATGATGCACTGAAGTGCCAGATATATTTCTTTGGGCTTTTCG
          1 ATGATGCACTGAAGTGCCAAATATATTACTTCGGACTTTTCG

                    *   *    *               *          
        985 ATGATGCATTGAGGTG-GAAGATATATTACTTCAGAC-TTTCTG
          1 ATGATGCACTGAAGTGCCAA-ATATATTACTTCGGACTTTTC-G

                    
       1027 ATGATGCA
          1 ATGATGCA

       1035 ATGTGCTAGA


Statistics
Matches: 76,  Mismatches: 13, Indels: 6
        0.80            0.14        0.06

Matches are distributed among these distances:
  41    5  0.07
  42   69  0.91
  43    2  0.03

ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35


Consensus pattern (42 bp):   
ATGATGCACTGAAGTGCCAAATATATTACTTCGGACTTTTCG
Done.