Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006073.1 Kokia drynarioides strain JFW-HI SEQ_120556, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 652

Length: 1087
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33


Found at i:688 original size:13 final size:13

Alignment explanation


    Indices: 670--694  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        660 CCCATTTTAT

                         
        670 CATTTTTAGCATG
          1 CATTTTTAGCATG

                        
        683 CATTTTTAGCAT
          1 CATTTTTAGCAT

        695 TTTTTTAGTA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.24, C:0.16, G:0.12, T:0.48


Consensus pattern (13 bp):   
CATTTTTAGCATG
Done.