Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01006082.1 Kokia drynarioides strain JFW-HI SEQ_120573, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2506
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34


Found at i:1251 original size:15 final size:15

Alignment explanation


    Indices: 1231--1266  Score: 54
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       1221 GGAAAATCTT

                   *  *    
       1231 GAAGTTCCTGTTCCA
          1 GAAGTTCATGATCCA

                           
       1246 GAAGTTCATGATCCA
          1 GAAGTTCATGATCCA

                  
       1261 GAAGTT
          1 GAAGTT

       1267 GTGAATGTTC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   19  1.00

ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Consensus pattern (15 bp):   
GAAGTTCATGATCCA
Done.